[4837] | 1 | """Module where global ANUGA model parameters and default values are set |
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[4376] | 2 | """ |
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| 3 | |
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[6105] | 4 | import os |
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| 5 | import sys |
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| 6 | |
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[6086] | 7 | ################################################################################ |
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[4837] | 8 | # Numerical constants |
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[6086] | 9 | ################################################################################ |
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| 10 | |
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| 11 | epsilon = 1.0e-12 # Smallest number - used for safe division |
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| 12 | max_float = 1.0e36 # Largest number - used to initialise |
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| 13 | # (max, min) ranges |
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| 14 | default_smoothing_parameter = 0.001 # Default alpha for penalised |
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| 15 | # least squares fitting |
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| 16 | single_precision = 1.0e-6 # Smallest single precision number |
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[5436] | 17 | velocity_protection = 1.0e-6 |
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| 18 | |
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[6086] | 19 | ################################################################################ |
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| 20 | # Standard filenames, directories and system parameters used by ANUGA |
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| 21 | ################################################################################ |
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| 22 | |
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[4837] | 23 | pmesh_filename = '.\\pmesh' |
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| 24 | version_filename = 'stored_version_info.py' |
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| 25 | default_datadir = '.' |
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[4376] | 26 | time_format = '%d/%m/%y %H:%M:%S' |
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[4837] | 27 | umask = 002 # Controls file and directory permission created by anuga |
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| 28 | default_boundary_tag = 'exterior' |
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[4376] | 29 | |
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[4837] | 30 | # Major revision number for use with create_distribution |
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| 31 | # and update_anuga_user_guide |
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| 32 | major_revision = '1.0beta' |
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[4376] | 33 | |
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[6086] | 34 | ################################################################################ |
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| 35 | # Physical constants |
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| 36 | ################################################################################ |
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[4376] | 37 | |
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[4837] | 38 | manning = 0.03 # Manning's friction coefficient |
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| 39 | #g = 9.80665 # Gravity - FIXME reinstate this and fix unit tests. |
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[4376] | 40 | g = 9.8 |
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| 41 | #g(phi) = 9780313 * (1 + 0.0053024 sin(phi)**2 - 0.000 0059 sin(2*phi)**2) micro m/s**2, where phi is the latitude |
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| 42 | #The 'official' average is 9.80665 |
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| 43 | |
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[6086] | 44 | eta_w = 3.0e-3 # Wind stress coefficient |
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| 45 | rho_a = 1.2e-3 # Atmospheric density |
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| 46 | rho_w = 1023 # Fluid density [kg/m^3] (rho_w = 1023 for salt water) |
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[4376] | 47 | |
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[6086] | 48 | ################################################################################ |
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[4837] | 49 | # Limiters - used with linear reconstruction of vertex |
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| 50 | # values from centroid values |
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[6086] | 51 | ################################################################################ |
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[4837] | 52 | |
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| 53 | # Betas [0;1] control the allowed steepness of gradient for second order |
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| 54 | # extrapolations. Values of 1 allow the steepes gradients while |
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| 55 | # lower values are more conservative. Values of 0 correspond to |
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| 56 | # 1'st order extrapolations. |
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[4376] | 57 | # |
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[4768] | 58 | |
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[5442] | 59 | # There are separate betas for the w, uh, and vh limiters |
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[4376] | 60 | # I think these are better SR but they conflict with the unit tests! |
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| 61 | beta_w = 1.0 |
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| 62 | beta_w_dry = 0.2 |
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| 63 | beta_uh = 1.0 |
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| 64 | beta_uh_dry = 0.2 |
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| 65 | beta_vh = 1.0 |
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| 66 | beta_vh_dry = 0.2 |
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| 67 | |
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| 68 | # Alpha_balance controls how limiters are balanced between deep and shallow. |
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[6086] | 69 | # A large value will favour the deep water limiters, allowing the a closer hug |
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| 70 | # to the coastline. This will minimise 'creep' but at the same time cause |
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| 71 | # smaller time steps |
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[4376] | 72 | # Range: |
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| 73 | alpha_balance = 2.0 |
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| 74 | |
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| 75 | # Flag use of new limiters. |
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[4631] | 76 | # tight_slope_limiters = 0 means use old limiters (e.g. for some tests) |
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| 77 | # tight_slope_limiters = 1 means use new limiters that hug the bathymetry closer |
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[5181] | 78 | tight_slope_limiters = True |
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[4376] | 79 | |
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[5315] | 80 | # Use centroid velocities to reconstruct momentum at vertices in |
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| 81 | # very shallow water |
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[5313] | 82 | # This option has a first order flavour to it, but we still have second order |
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[5315] | 83 | # reconstruction of stage and this option only applies in |
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| 84 | # balance_deep_and_shallow when |
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[5313] | 85 | # alpha < 1 so in deeper water the full second order scheme is used. |
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[5290] | 86 | # |
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[5303] | 87 | # This option is good with tight_slope_limiters, especially for large domains. |
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[5313] | 88 | use_centroid_velocities = True |
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[5957] | 89 | |
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| 90 | # FIXME (Ole) Maybe get rid of order altogether and use beta_w |
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[6258] | 91 | default_order = 2 |
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[4376] | 92 | |
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[6086] | 93 | ################################################################################ |
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[4837] | 94 | # Timestepping |
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[6086] | 95 | ################################################################################ |
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[4376] | 96 | |
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[4837] | 97 | CFL = 1.0 # CFL condition assigned to domain.CFL - controls timestep size |
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| 98 | |
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[4712] | 99 | # Choose type of timestepping, |
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[6086] | 100 | #timestepping_method = 'rk2' # 2nd Order TVD scheme |
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[4712] | 101 | timestepping_method = 'euler' # 1st order euler |
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| 102 | |
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[5162] | 103 | # rk2 is a little more stable than euler, so rk2 timestepping |
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| 104 | # can deal with a larger beta when slope limiting the reconstructed |
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| 105 | # solution. The large beta is needed if solving problems sensitive |
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| 106 | # to numerical diffusion, like a small forced wave in an ocean |
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| 107 | beta_euler = 1.0 |
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| 108 | beta_rk2 = 1.6 |
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| 109 | |
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[4677] | 110 | # Option to search for signatures where isolated triangles are |
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| 111 | # responsible for a small global timestep. |
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| 112 | # Treating these by limiting their momenta may help speed up the |
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| 113 | # overall computation. |
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| 114 | # This facility is experimental. |
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[4805] | 115 | # protect_against_isolated_degenerate_timesteps = False |
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[4677] | 116 | protect_against_isolated_degenerate_timesteps = False |
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[4376] | 117 | |
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[4837] | 118 | min_timestep = 1.0e-6 # Minimal timestep accepted in ANUGA |
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| 119 | max_timestep = 1.0e+3 |
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[6086] | 120 | max_smallsteps = 50 # Max number of degenerate steps allowed b4 |
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| 121 | # trying first order |
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[4376] | 122 | |
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[6086] | 123 | # Perhaps minimal timestep could be based on the geometry as follows: |
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| 124 | # Define maximal possible speed in open water v_max, e.g. 500m/s (soundspeed?) |
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| 125 | # Then work out minimal internal distance in mesh r_min and set |
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| 126 | # min_timestep = r_min/v_max |
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[4837] | 127 | # |
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[6086] | 128 | # Max speeds are calculated in the flux function as |
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[4837] | 129 | # |
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[6086] | 130 | # lambda = v +/- sqrt(gh) |
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[4837] | 131 | # |
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| 132 | # so with 500 m/s, h ~ 500^2/g = 2500 m well out of the domain of the |
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| 133 | # shallow water wave equation |
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| 134 | # |
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[6086] | 135 | # The actual soundspeed can be as high as 1530m/s |
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| 136 | # (see http://staff.washington.edu/aganse/public.projects/clustering/clustering.html), |
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| 137 | # but that would only happen with h>225000m in this equation. Why ? |
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| 138 | # The maximal speed we specify is really related to the max speed |
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| 139 | # of surface pertubation |
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[4837] | 140 | # |
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[6086] | 141 | # v_max = 100 #For use in domain_ext.c |
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| 142 | # sound_speed = 500 |
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[4376] | 143 | |
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[6086] | 144 | ################################################################################ |
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[4837] | 145 | # Ranges specific to the shallow water wave equation |
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[6086] | 146 | # These control maximal and minimal values of quantities |
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| 147 | ################################################################################ |
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[4376] | 148 | |
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[4837] | 149 | # Water depth below which it is considered to be 0 in the model |
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| 150 | minimum_allowed_height = 1.0e-3 |
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[4376] | 151 | |
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[4837] | 152 | # Water depth below which it is *stored* as 0 |
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| 153 | minimum_storable_height = 1.0e-5 |
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[4376] | 154 | |
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[4805] | 155 | # FIXME (Ole): Redefine this parameter to control maximal speeds in general |
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| 156 | # and associate it with protect_against_isolated_degenerate_timesteps = True |
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[4732] | 157 | maximum_allowed_speed = 0.0 # Maximal particle speed of water |
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| 158 | #maximum_allowed_speed = 1.0 # Maximal particle speed of water |
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[6086] | 159 | # Too large (100) creates 'flopping' water |
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| 160 | # Too small (0) creates 'creep' |
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[4837] | 161 | |
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| 162 | maximum_froude_number = 100.0 # To be used in limiters. |
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[4376] | 163 | |
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[6086] | 164 | ################################################################################ |
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[4837] | 165 | # Performance parameters used to invoke various optimisations |
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[6086] | 166 | ################################################################################ |
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[4815] | 167 | |
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[4837] | 168 | use_extensions = True # Use C-extensions |
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[6086] | 169 | use_psyco = True # Use psyco optimisations |
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[4376] | 170 | |
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[4837] | 171 | optimise_dry_cells = True # Exclude dry and still cells from flux computation |
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| 172 | optimised_gradient_limiter = True # Use hardwired gradient limiter |
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[6086] | 173 | use_edge_limiter = False # The edge limiter is better, but most runs have been |
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| 174 | # using vertex limiting. Validations passed with this |
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| 175 | # one True 9th May 2008, but many unit tests need |
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| 176 | # backward compatibility flag set FIXME(Ole). |
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[4837] | 177 | |
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[4376] | 178 | points_file_block_line_size = 500 # Number of lines read in from a points file |
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| 179 | # when blocking |
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[4502] | 180 | |
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[6086] | 181 | ################################################################################ |
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| 182 | # Dynamically-defined constants. |
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| 183 | ################################################################################ |
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[4685] | 184 | |
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[6086] | 185 | # Determine if we can read/write large NetCDF files |
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| 186 | netcdf_mode_w = 'w' |
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| 187 | netcdf_mode_a = 'a' |
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| 188 | netcdf_mode_r = 'r' |
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[4837] | 189 | |
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[6105] | 190 | # Code to set the write mode depending on |
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| 191 | # whether Scientific.IO supports large NetCDF files |
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[6106] | 192 | s = """from Scientific.IO.NetCDF import NetCDFFile; fid = NetCDFFile('tmpfilenamexx', 'wl')""" |
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[4837] | 193 | |
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[6105] | 194 | # Need to run in a separate process due an |
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| 195 | # error with older versions of Scientific.IO |
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| 196 | if sys.platform == 'win32': |
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| 197 | null = 'NUL' |
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| 198 | else: |
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| 199 | null = '/dev/null' |
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[6106] | 200 | cmd = 'python -c "%s" 2> %s' % (s, null) |
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| 201 | err = os.system(cmd) |
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[6105] | 202 | |
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[6106] | 203 | if err != 0: |
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[6105] | 204 | # The Python script s failed e.g. with a segfault |
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| 205 | # which means that large file support is |
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| 206 | # definitely not supported |
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| 207 | pass |
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| 208 | else: |
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| 209 | # Try the import within this process |
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| 210 | try: |
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| 211 | exec(s) |
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| 212 | except IOError: |
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[6108] | 213 | # NetCDFFile does not segfault but it does not |
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| 214 | # support large file support |
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[6105] | 215 | pass |
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[6106] | 216 | else: |
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| 217 | # Set the default mode to large file support |
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| 218 | netcdf_mode_w = 'wl' |
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