[1363] | 1 | import sys |
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| 2 | from os import sep |
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| 3 | sys.path.append('..'+sep+'pyvolution') |
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| 4 | |
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| 5 | """Class Parallel_Domain - |
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| 6 | 2D triangular domains for finite-volume computations of |
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| 7 | the advection equation, with extra structures to allow |
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| 8 | communication between other Parallel_Domains and itself |
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| 9 | |
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| 10 | This module contains a specialisation of class Domain from module advection.py |
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| 11 | |
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| 12 | Ole Nielsen, Stephen Roberts, Duncan Gray, Christopher Zoppou |
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| 13 | Geoscience Australia, 2004 |
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| 14 | """ |
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| 15 | |
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[1387] | 16 | from advection import * |
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| 17 | Advection_Domain = Domain |
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[1424] | 18 | from Numeric import zeros, Float, Int, ones, allclose, array |
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[1407] | 19 | import pypar |
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[1363] | 20 | |
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[1407] | 21 | |
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[1387] | 22 | class Parallel_Domain(Advection_Domain): |
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[1363] | 23 | |
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[1424] | 24 | def __init__(self, coordinates, vertices, boundary = None, |
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| 25 | full_send_dict = None, ghost_recv_dict = None, |
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[1414] | 26 | velocity = None): |
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[1363] | 27 | |
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[1424] | 28 | self.processor = pypar.rank() |
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| 29 | self.numproc = pypar.size() |
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[1426] | 30 | #print 'Processor %d'%self.processor |
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| 31 | #velocity = [(self.processor+1),0.0] |
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[1424] | 32 | |
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[1426] | 33 | #print 'velocity',velocity |
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[1424] | 34 | |
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[1387] | 35 | Advection_Domain.__init__(self, coordinates, vertices, boundary, velocity) |
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[1363] | 36 | |
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[1387] | 37 | N = self.number_of_elements |
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| 38 | |
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[1414] | 39 | self.processor = pypar.rank() |
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| 40 | self.numproc = pypar.size() |
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[1407] | 41 | |
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[1424] | 42 | self.full_send_dict = full_send_dict |
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| 43 | self.ghost_recv_dict = ghost_recv_dict |
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[1363] | 44 | |
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[1424] | 45 | #print self.full_send_dict |
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| 46 | #print self.ghost_recv_dict |
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[1407] | 47 | |
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[1363] | 48 | def check_integrity(self): |
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[1387] | 49 | Advection_Domain.check_integrity(self) |
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[1363] | 50 | |
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[1387] | 51 | msg = 'Will need to check global and local numbering' |
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[1363] | 52 | assert self.conserved_quantities[0] == 'stage', msg |
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| 53 | |
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| 54 | |
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[1407] | 55 | |
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| 56 | def update_timestep(self, yieldstep, finaltime): |
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[1414] | 57 | |
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| 58 | # Calculate local timestep |
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[1407] | 59 | Advection_Domain.update_timestep(self, yieldstep, finaltime) |
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| 60 | |
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[1414] | 61 | # For some reason it looks like pypar only reduces numeric arrays |
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| 62 | # hence we need to create some dummy arrays for communication |
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| 63 | ltimestep = ones( 1, Float ) |
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| 64 | ltimestep[0] = self.timestep |
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[1407] | 65 | |
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[1414] | 66 | gtimestep = zeros( 1, Float) # Buffer for results |
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[1407] | 67 | |
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[1414] | 68 | pypar.raw_reduce(ltimestep, gtimestep, pypar.MIN, 0) |
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| 69 | pypar.broadcast(gtimestep,0) |
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[1424] | 70 | #pypar.Barrier() |
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[1407] | 71 | |
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[1414] | 72 | self.timestep = gtimestep[0] |
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[1407] | 73 | |
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[1414] | 74 | |
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| 75 | |
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[1402] | 76 | def update_ghosts(self): |
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[1414] | 77 | |
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| 78 | # We must send the information from the full cells and |
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| 79 | # receive the information for the ghost cells |
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| 80 | # We have a dictionary of lists with ghosts expecting updates from |
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| 81 | # the separate processors |
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| 82 | |
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[1436] | 83 | from weave import converters |
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| 84 | |
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[1414] | 85 | stage_cv = self.quantities['stage'].centroid_values |
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| 86 | |
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[1424] | 87 | # update of non-local ghost cells |
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[1426] | 88 | for iproc in range(self.numproc): |
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[1414] | 89 | |
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[1426] | 90 | if iproc == self.processor: |
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| 91 | #Send data from iproc processor to other processors |
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| 92 | for send_proc in self.full_send_dict: |
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| 93 | if send_proc != iproc: |
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| 94 | Idf = self.full_send_dict[send_proc][0] |
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| 95 | Xout = self.full_send_dict[send_proc][1] |
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[1436] | 96 | N = len(Xout) |
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| 97 | |
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| 98 | """ |
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| 99 | # Original python Code |
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| 100 | for i in range(N): |
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[1426] | 101 | Xout[i] = stage_cv[Idf[i]] |
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[1436] | 102 | """ |
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| 103 | code1 = """ |
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| 104 | for (int i=0; i<N ; i++){ |
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| 105 | Xout(i) = stage_cv(Idf(i)); |
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| 106 | } |
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| 107 | """ |
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| 108 | weave.inline(code1, ['stage_cv','Idf','Xout','N'], |
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| 109 | type_converters = converters.blitz, compiler='gcc'); |
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[1426] | 110 | |
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| 111 | pypar.send(Xout,send_proc) |
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[1428] | 112 | #print 'Processor %d Sending to Processor %d'%(self.processor,send_proc) |
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[1426] | 113 | else: |
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| 114 | #Receive data from the iproc processor |
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| 115 | if self.ghost_recv_dict.has_key(iproc): |
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| 116 | Idg = self.ghost_recv_dict[iproc][0] |
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| 117 | X = self.ghost_recv_dict[iproc][1] |
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| 118 | |
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| 119 | X = pypar.receive(iproc,X) |
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[1436] | 120 | N = len(X) |
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[1428] | 121 | #print 'Processor %d receiving from Processor %d'%(self.processor,iproc) |
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[1436] | 122 | for i in range(N): |
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[1426] | 123 | stage_cv[Idg[i]] = X[i] |
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| 124 | pypar.barrier() |
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| 125 | |
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[1424] | 126 | #local update of ghost cells |
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| 127 | iproc = self.processor |
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| 128 | if self.full_send_dict.has_key(iproc): |
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| 129 | Idf = self.full_send_dict[iproc][0] |
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| 130 | #print Idf |
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| 131 | Idg = self.ghost_recv_dict[iproc][0] |
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[1436] | 132 | N = len(Idg) |
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[1424] | 133 | #print Idg |
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[1436] | 134 | for i in range(N): |
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[1424] | 135 | #print i,Idg[i],Idf[i] |
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| 136 | stage_cv[Idg[i]] = stage_cv[Idf[i]] |
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[1414] | 137 | |
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[1363] | 138 | |
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[1424] | 139 | # if self.ghosts is not None: |
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| 140 | # stage_cv = self.quantities['stage'].centroid_values |
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| 141 | # for triangle in self.ghosts: |
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| 142 | # stage_cv[triangle] = stage_cv[self.ghosts[triangle]] |
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[1407] | 143 | |
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[1424] | 144 | |
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[1407] | 145 | def write_time(self): |
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| 146 | if self.min_timestep == self.max_timestep: |
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| 147 | print 'Processor %d, Time = %.4f, delta t = %.8f, steps=%d (%d)'\ |
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| 148 | %(self.processor, self.time, self.min_timestep, self.number_of_steps, |
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| 149 | self.number_of_first_order_steps) |
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| 150 | elif self.min_timestep > self.max_timestep: |
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| 151 | print 'Processor %d, Time = %.4f, steps=%d (%d)'\ |
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| 152 | %(self.processor, self.time, self.number_of_steps, |
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| 153 | self.number_of_first_order_steps) |
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| 154 | else: |
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| 155 | print 'Processor %d, Time = %.4f, delta t in [%.8f, %.8f], steps=%d (%d)'\ |
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| 156 | %(self.processor, self.time, self.min_timestep, |
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| 157 | self.max_timestep, self.number_of_steps, |
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| 158 | self.number_of_first_order_steps) |
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| 159 | |
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| 160 | |
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| 161 | |
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[1387] | 162 | def evolve(self, yieldstep = None, finaltime = None): |
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| 163 | """Specialisation of basic evolve method from parent class |
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[1363] | 164 | """ |
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| 165 | |
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[1387] | 166 | #Initialise real time viz if requested |
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[1407] | 167 | if self.time == 0.0: |
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| 168 | pass |
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[1363] | 169 | |
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[1387] | 170 | #Call basic machinery from parent class |
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| 171 | for t in Advection_Domain.evolve(self, yieldstep, finaltime): |
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[1363] | 172 | |
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[1387] | 173 | #Pass control on to outer loop for more specific actions |
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| 174 | yield(t) |
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[1363] | 175 | |
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| 176 | |
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| 177 | |
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[1414] | 178 | |
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