source: inundation/ga/storm_surge/parallel/parallel_advection.py @ 1599

import sys
from os import sep
sys.path.append('..'+sep+'pyvolution')

"""Class Parallel_Domain -
2D triangular domains for finite-volume computations of
the advection equation, with extra structures to allow
communication between other Parallel_Domains and itself

This module contains a specialisation of class Domain from module advection.py

Ole Nielsen, Stephen Roberts, Duncan Gray, Christopher Zoppou
Geoscience Australia, 2004-2005
"""

import logging, logging.config
logger = logging.getLogger('parallel')
logger.setLevel(logging.WARNING)

try:
    logging.config.fileConfig('log.ini')
except:
    pass

from advection import *
from Numeric import zeros, Float, Int, ones, allclose, array
import pypar


class Parallel_Domain(Domain):

    def __init__(self, coordinates, vertices, boundary = None,
                 full_send_dict = None, ghost_recv_dict = None,
                 velocity = None):

        self.processor = pypar.rank()
        self.numproc   = pypar.size()

        Domain.__init__(self, coordinates, vertices, boundary,
                        velocity = velocity)

        N = self.number_of_elements

        self.processor = pypar.rank()
        self.numproc   = pypar.size()


        # Setup Communication Buffers
        self.nsys = 1
        for key in full_send_dict:
            buffer_shape = full_send_dict[key][0].shape[0]
            full_send_dict[key].append(zeros( (buffer_shape,self.nsys) ,Float))


        for key in ghost_recv_dict:
            buffer_shape = ghost_recv_dict[key][0].shape[0]
            ghost_recv_dict[key].append(zeros( (buffer_shape,self.nsys) ,Float))

        self.full_send_dict  = full_send_dict
        self.ghost_recv_dict = ghost_recv_dict

        self.communication_time = 0.0
        self.communication_reduce_time = 0.0

    def check_integrity(self):
        Domain.check_integrity(self)

        msg = 'Will need to check global and local numbering'
        assert self.conserved_quantities[0] == 'stage', msg

    def update_timestep(self, yieldstep, finaltime):

        # Calculate local timestep
        Domain.update_timestep(self, yieldstep, finaltime)

        import time
        t0 = time.time()

        # For some reason it looks like pypar only reduces numeric arrays
        # hence we need to create some dummy arrays for communication
        ltimestep = ones( 1, Float )
        ltimestep[0] = self.timestep
        gtimestep = zeros( 1, Float) # Buffer for results

        pypar.raw_reduce(ltimestep, gtimestep, pypar.MIN, 0)
        pypar.broadcast(gtimestep,0)

        self.timestep = gtimestep[0]

        self.communication_reduce_time += time.time()-t0


    def update_ghosts(self):

        # We must send the information from the full cells and
        # receive the information for the ghost cells
        # We have a dictionary of lists with ghosts expecting updates from
        # the separate processors

        from Numeric import take,put
        import time
        t0 = time.time()

        stage_cv = self.quantities['stage'].centroid_values

        # update of non-local ghost cells
        for iproc in range(self.numproc):
            if iproc == self.processor:
                #Send data from iproc processor to other processors
                for send_proc in self.full_send_dict:
                    if send_proc != iproc:

                        Idf  = self.full_send_dict[send_proc][0]
                        Xout = self.full_send_dict[send_proc][2]

                        N = len(Idf)

                        #for i in range(N):
                        #    Xout[i,0] = stage_cv[Idf[i]]
                        Xout[:,0] = take(stage_cv, Idf)

                        pypar.send(Xout,send_proc)


            else:
                #Receive data from the iproc processor
                if  self.ghost_recv_dict.has_key(iproc):

                    # LINDA:
                    # now store ghost as local id, global id, value
                    Idg = self.ghost_recv_dict[iproc][0]
                    X = self.ghost_recv_dict[iproc][2]

                    X = pypar.receive(iproc,X)
                    N = len(Idg)

                    put(stage_cv, Idg, X[:,0])
                    #for i in range(N):
                    #    stage_cv[Idg[i]] = X[i,0]


        #local update of ghost cells
        iproc = self.processor
        if self.full_send_dict.has_key(iproc):

            # LINDA:
            # now store full as local id, global id, value
            Idf  = self.full_send_dict[iproc][0]

            # LINDA:
            # now store ghost as local id, global id, value
            Idg = self.ghost_recv_dict[iproc][0]

            N = len(Idg)

            #for i in range(N):
            #    #print i,Idg[i],Idf[i]
            #    stage_cv[Idg[i]] = stage_cv[Idf[i]]

            put(stage_cv, Idg, take(stage_cv, Idf))


        self.communication_time += time.time()-t0


    def write_time(self):
        if self.min_timestep == self.max_timestep:
            print 'Processor %d, Time = %.4f, delta t = %.8f, steps=%d (%d)'\
                  %(self.processor, self.time, self.min_timestep, self.number_of_steps,
                    self.number_of_first_order_steps)
        elif self.min_timestep > self.max_timestep:
            print 'Processor %d, Time = %.4f, steps=%d (%d)'\
                  %(self.processor, self.time, self.number_of_steps,
                    self.number_of_first_order_steps)
        else:
            print 'Processor %d, Time = %.4f, delta t in [%.8f, %.8f], steps=%d (%d)'\
                  %(self.processor, self.time, self.min_timestep,
                    self.max_timestep, self.number_of_steps,
                    self.number_of_first_order_steps)



    def evolve(self, yieldstep = None, finaltime = None):
        """Specialisation of basic evolve method from parent class
        """

        #Initialise real time viz if requested
        if self.time == 0.0:
            pass

        #Call basic machinery from parent class
        for t in Domain.evolve(self, yieldstep, finaltime):

            #Pass control on to outer loop for more specific actions
            yield(t)