#!/usr/bin/env python import unittest from math import sqrt from sparse import * from Numeric import allclose, array, transpose, Float class TestCase(unittest.TestCase): def setUp(self): pass def tearDown(self): pass def test_init1(Self): """Test initialisation from dimensions """ A = Sparse(3,3) A[1,1] = 4 for i in range(3): for j in range(3): if i==1 and j==1: assert A[i,j] == 4.0 else: assert A[i,j] == 0.0 def test_init2(Self): """Test initialisation from dense matrix """ A = Sparse(4,3) A[1,1] = 4 A[2,0] = 6 A[0,1] = 13 A[0,2] = -6 A[2,2] = 1 B = A.todense() C = Sparse(B) assert allclose(C.todense(), B) def test_dense(self): A = Sparse(4,3) A[1,1] = 4 assert allclose(A.todense(), [[0,0,0], [0,4,0], [0,0,0], [0,0,0]]) def test_reset_to_zero_possible(self): """Test that nonzero element can be reset to zero (This was not possible when we tried sparse from scipy). """ A = Sparse(3,3) A[1,1] = 4 A[1,1] = 0 assert len(A) == 0 assert allclose(A.todense(), [[0,0,0], [0,0,0], [0,0,0]]) #Set an existing zero element to zero A[1,2] = 0 assert len(A) == 0 assert allclose(A.todense(), [[0,0,0], [0,0,0], [0,0,0]]) def test_sparse_multiplication_vector(self): A = Sparse(3,3) A[0,0] = 3 A[1,1] = 2 A[1,2] = 2 A[2,2] = 1 #Right hand side vector v = [2,3,4] u = A*v assert allclose(u, [6,14,4]) #Right hand side column v = array([[2,4],[3,4],[4,4]]) u = A*v[:,0] assert allclose(u, [6,14,4]) u = A*v[:,1] assert allclose(u, [12,16,4]) def test_sparse_multiplication_matrix(self): A = Sparse(3,3) A[0,0] = 3 A[1,1] = 2 A[1,2] = 2 A[2,2] = 1 #Right hand side matrix v = array([[2,4],[3,4],[4,4]]) u = A*v assert allclose(u, [[6,12], [14,16], [4,4]]) def test_sparse_transpose_multiplication(self): A = Sparse(3,3) A[0,0] = 3 A[1,1] = 2 A[1,2] = 2 A[2,2] = 1 #Right hand side vector v = [2,3,4] u = A.trans_mult(v) assert allclose(u, [6,6,10]) def test_scalar_multiplication(self): """Test method __rmul__ """ A = Sparse(3,3) A[0,0] = 3 A[1,1] = 2 A[1,2] = 2 A[2,2] = 1 B = 3*A assert allclose(B.todense(), 3*A.todense()) B = A*3 assert allclose(B.todense(), 3*A.todense()) try: B = 'a'*A except TypeError: pass else: raise 'Should have failed' def test_sparse_addition(self): """ Test sparse addition with dok format """ A = Sparse(3,3) A[0,0] = 3 A[1,1] = 2 A[1,2] = 2 A[2,2] = 1 B = 3*A B[1,0] = 2 C = A+B assert allclose(C.todense(), [[12,0,0], [2,8,8], [0,0,4]]) def test_sparse_tocsr(self): """ Test conversion to csr format """ A = Sparse(4,3) A[0,0] = 3 A[1,1] = 2 A[1,2] = 2 A[2,2] = 1 A[0,2] = 4 A[2,0] = 5 #print ' ' #print A.todense() B = Sparse_CSR(A) #print B.todense() C = [1, 2, 3] assert allclose(B*C, [15.0, 10.0 ,8.0, 0.0]) C2 = [[1,2],[2,4],[3,6]] #print B*C2 assert allclose(B*C2, [[15.0, 30.0],[10.0, 20.0],[8.0, 16.0],[0.0, 0.0]]) #------------------------------------------------------------- if __name__ == "__main__": suite = unittest.makeSuite(TestCase, 'test') runner = unittest.TextTestRunner() runner.run(suite)