source: inundation/parallel/documentation/code/RunParallelMerimbulaMetis.py @ 3315

#!/usr/bin/env python
#########################################################
#
#  Main file for parallel mesh testing. Runs an advection
# flow simulation using a rectangular mesh
#
#  This is a modification of the run_parallel_advection.py
# file
#
#
# *) The (new) files that have been added to manage the
# grid partitioning are
#    +) pmesh_divide_metis.py: subdivide a pmesh
#    +) build_submesh.py: build the submeshes on the host
# processor.
#    +) build_local.py: build the GA mesh datastructure
# on each processor.
#    +) build_commun.py: handle the communication between
# the host and processors
#
#  Authors: Linda Stals, Steve Roberts and Matthew Hardy,
# June 2005
#
#
#
#########################################################
import sys
import pypar    # The Python-MPI interface
import time


from os import sep
sys.path.append('..'+sep+'pyvolution')
sys.path.append('..'+sep+'parallel')

# Numeric arrays

from Numeric import array, zeros, Float

# pmesh

from pyvolution.pmesh2domain import pmesh_to_domain_instance
from pyvolution.advection import Domain as Advection_Domain
from parallel.parallel_advection import Parallel_Domain

from pyvolution.generic_boundary_conditions import Transmissive_boundary

# Mesh partition routines

from parallel.pmesh_divide  import pmesh_divide_metis
from parallel.build_submesh import build_submesh
from parallel.build_local   import build_local_mesh
from parallel.build_commun  import send_submesh, rec_submesh, extract_hostmesh


############################
# Set the initial conditions
############################

class Set_Stage:
    """Set an initial condition with constant water height, for x<x0
    """

    def __init__(self, x0=0.25, x1=0.5, h=1.0):
        self.x0 = x0
        self.x1 = x1
        self.h  = h

    def __call__(self, x, y):
        return self.h*((x>self.x0)&(x<self.x1))

rect = zeros( 4, Float) # Buffer for results

###############################
# Read in processor information
###############################

numprocs = pypar.size()
myid = pypar.rank()
processor_name = pypar.Get_processor_name()

#######################
# Partition the domain
#######################

if myid == 0:

    # Read in the test files

    filename = 'parallel/merimbula_10785.tsh'

    mesh_full = pmesh_to_domain_instance(filename, Advection_Domain)
    mesh_full.set_quantity('stage', Set_Stage(756000.0,756500.0,4.0))

    # Define the domain boundaries for visualisation
   
    rect = array(mesh_full.xy_extent, Float)

    # Subdivide the mesh

    nodes, triangles, boundary, triangles_per_proc, quantities  =\
            pmesh_divide_metis(mesh_full, numprocs)

    # Build the mesh that should be assigned to each processor,
    # this includes ghost nodes and the communicaiton pattern
    
    submesh = build_submesh(nodes, triangles, boundary, quantities, \
                            triangles_per_proc)

    # Send the mesh partition to the appropriate processor

    for p in range(1, numprocs):
      send_submesh(submesh, triangles_per_proc, p)

    # Build the local mesh for processor 0

    points, vertices, boundary, quantities, ghost_recv_dict, full_send_dict = \
             extract_hostmesh(submesh, triangles_per_proc)


else:
    # Read in the mesh partition that belongs to this
    # processor (note that the information is in the
    # correct form for the GA data structure

    points, vertices, boundary, quantities, ghost_recv_dict, full_send_dict = \
             rec_submesh(0)

###########################################
# Start the computations on each subpartion
###########################################

# The visualiser needs to know the size of the whole domain

pypar.broadcast(rect,0)

# Build the domain for this processor

domain = Parallel_Domain(points, vertices, boundary,
                         full_send_dict  = full_send_dict,
                         ghost_recv_dict = ghost_recv_dict,
                         velocity = [0.1,0.0])

# Visualise the domain

try:
    domain.initialise_visualiser(rect=rect)
except:
    print 'No visualiser'
    
# Define the boundaries, including the ghost boundary

T = Transmissive_boundary(domain)
domain.set_boundary( {'outflow': T, 'inflow': T, 'inner':T, \
                      'exterior': T, 'open':T, 'ghost':None} )

# Set the initial quantities

domain.set_quantity('stage', quantities['stage'])

# Set the number of time steps, as well as the start and end time

t0 = time.time()
yieldstep = 1000
finaltime = 50000

# Start the evolve calculations

for t in domain.evolve(yieldstep = yieldstep, finaltime = finaltime):
    if myid == 0:
        domain.write_time()

# Print some timing statistics

if myid == 0:
    print 'That took %.2f seconds' %(time.time()-t0)