[2769] | 1 | #!/usr/bin/env python |
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| 2 | ######################################################### |
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| 3 | # |
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| 4 | # Main file for parallel mesh testing. Runs an advection |
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| 5 | # flow simulation using a rectangular mesh |
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| 6 | # |
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| 7 | # This is a modification of the run_parallel_advection.py |
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| 8 | # file |
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| 9 | # |
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| 10 | # |
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| 11 | # *) The (new) files that have been added to manage the |
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| 12 | # grid partitioning are |
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| 13 | # +) pmesh_divide_metis.py: subdivide a pmesh |
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| 14 | # +) build_submesh.py: build the submeshes on the host |
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| 15 | # processor. |
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| 16 | # +) build_local.py: build the GA mesh datastructure |
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| 17 | # on each processor. |
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| 18 | # +) build_commun.py: handle the communication between |
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| 19 | # the host and processors |
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| 20 | # |
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| 21 | # Authors: Linda Stals, Steve Roberts and Matthew Hardy, |
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| 22 | # June 2005 |
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| 23 | # |
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| 24 | # |
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| 25 | # |
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| 26 | ######################################################### |
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| 27 | import sys |
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| 28 | import pypar # The Python-MPI interface |
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| 29 | import time |
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| 30 | |
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| 31 | |
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| 32 | from os import sep |
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| 33 | sys.path.append('..'+sep+'pyvolution') |
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| 34 | |
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| 35 | # Numeric arrays |
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| 36 | |
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| 37 | from Numeric import array, zeros, Float |
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| 38 | # pmesh |
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| 39 | |
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| 40 | #from shallow_water import Domain |
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| 41 | |
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| 42 | from print_stats import print_test_stats, build_full_flag |
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| 43 | |
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| 44 | from pmesh2domain import pmesh_to_domain_instance |
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| 45 | from advection import Domain as Advection_Domain |
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| 46 | from parallel_advection import Parallel_Domain |
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| 47 | |
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| 48 | from generic_boundary_conditions import Transmissive_boundary |
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| 49 | |
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| 50 | # mesh partition routines |
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| 51 | |
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| 52 | from pmesh_divide import pmesh_divide_metis |
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[2909] | 53 | from build_submesh import build_submesh |
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[2769] | 54 | from build_local import build_local_mesh |
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[2909] | 55 | from build_commun import send_submesh, rec_submesh, extract_hostmesh |
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[2769] | 56 | |
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| 57 | |
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| 58 | class Set_Stage: |
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| 59 | """Set an initial condition with constant water height, for x<x0 |
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| 60 | """ |
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| 61 | |
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| 62 | def __init__(self, x0=0.25, x1=0.5, h=1.0): |
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| 63 | self.x0 = x0 |
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| 64 | self.x1 = x1 |
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| 65 | self.h = h |
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| 66 | |
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| 67 | def __call__(self, x, y): |
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| 68 | return self.h*((x>self.x0)&(x<self.x1)) |
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| 69 | |
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| 70 | # read in the processor information |
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| 71 | |
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| 72 | numprocs = pypar.size() |
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| 73 | myid = pypar.rank() |
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| 74 | processor_name = pypar.Get_processor_name() |
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| 75 | |
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| 76 | |
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| 77 | #------- |
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| 78 | # Domain |
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| 79 | rect = zeros( 4, Float) # Buffer for results |
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| 80 | |
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| 81 | if myid == 0: |
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| 82 | |
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| 83 | # read in the test files |
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| 84 | |
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| 85 | # filename = 'test-100.tsh' |
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| 86 | filename = 'merimbula_10785.tsh' |
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| 87 | nx = numprocs |
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| 88 | ny = 1 |
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| 89 | if nx*ny != numprocs: |
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| 90 | print "WARNING: number of subboxes is not equal to the number of proc" |
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| 91 | |
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| 92 | domain_full = pmesh_to_domain_instance(filename, Advection_Domain) |
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| 93 | # domain_full.set_quantity('stage', Set_Stage(200.0,300.0,1.0)) |
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| 94 | domain_full.set_quantity('stage', Set_Stage(756000.0,756500.0,4.0)) |
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| 95 | |
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| 96 | nodes, triangles, boundary, triangles_per_proc, quantities =\ |
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| 97 | pmesh_divide_metis(domain_full, numprocs) |
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| 98 | |
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| 99 | # subdivide the mesh |
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| 100 | rect = array(domain_full.xy_extent, Float) |
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| 101 | # rect = array(rect, Float) |
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| 102 | |
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| 103 | submesh = build_submesh(nodes, triangles, boundary, quantities, \ |
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| 104 | triangles_per_proc) |
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| 105 | |
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| 106 | # send the mesh partition to the appropriate processor |
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| 107 | |
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| 108 | for p in range(1, numprocs): |
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| 109 | send_submesh(submesh, triangles_per_proc, p) |
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| 110 | |
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[2909] | 111 | # Build the local mesh for processor 0 |
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| 112 | |
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| 113 | points, vertices, boundary, quantities, ghost_recv_dict, full_send_dict = \ |
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| 114 | extract_hostmesh(submesh, triangles_per_proc) |
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[2769] | 115 | |
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| 116 | # read in the mesh partition that belongs to this |
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| 117 | # processor (note that the information is in the |
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| 118 | # correct form for the GA data structure |
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| 119 | |
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| 120 | else: |
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| 121 | [points, vertices, boundary, quantities, ghost_recv_dict, full_send_dict] = \ |
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| 122 | rec_submesh(0) |
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| 123 | |
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| 124 | pypar.broadcast(rect,0) |
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| 125 | |
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| 126 | domain = Parallel_Domain(points, vertices, boundary, |
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| 127 | full_send_dict = full_send_dict, |
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| 128 | ghost_recv_dict = ghost_recv_dict, |
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| 129 | velocity = [0.1,0.0]) |
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| 130 | |
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| 131 | # Make a notes of which triangles are full and which are ghost |
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| 132 | |
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| 133 | tri_full_flag = build_full_flag(domain, ghost_recv_dict) |
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| 134 | |
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| 135 | #domain.initialise_visualiser(rect=rect) |
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| 136 | |
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| 137 | #Boundaries |
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| 138 | |
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| 139 | T = Transmissive_boundary(domain) |
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| 140 | #R = Reflective_boundary(domain) |
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| 141 | domain.set_boundary( {'outflow': T, 'inflow': T, 'inner':T, 'exterior': T, 'open':T, 'ghost':None} ) |
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| 142 | |
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| 143 | |
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| 144 | |
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| 145 | domain.set_quantity('stage', quantities['stage']) |
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| 146 | |
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| 147 | #--------- |
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| 148 | # Evolution |
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| 149 | t0 = time.time() |
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| 150 | |
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| 151 | |
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| 152 | try: |
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| 153 | domain.initialise_visualiser(rect=rect) |
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| 154 | #domain.visualiser.coloring['stage'] = True |
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| 155 | #domain.visualiser.scale_z['stage'] = 0.2 |
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| 156 | except: |
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| 157 | print 'No visualiser' |
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| 158 | |
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| 159 | |
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| 160 | from norms import linf_norm |
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| 161 | |
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| 162 | #yieldstep = 1 |
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| 163 | #finaltime = 4000 |
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| 164 | |
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| 165 | yieldstep = 1000 |
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| 166 | finaltime = 50000 |
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| 167 | |
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| 168 | for t in domain.evolve(yieldstep = yieldstep, finaltime = finaltime): |
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| 169 | if myid == 0: |
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| 170 | domain.write_time() |
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| 171 | print_test_stats(domain, tri_full_flag) |
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| 172 | |
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| 173 | if myid == 0: |
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| 174 | print 'That took %.2f seconds' %(time.time()-t0) |
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