1 | """boundary.py - Classes for implementing boundary conditions |
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2 | """ |
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3 | |
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4 | |
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5 | class Boundary: |
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6 | """Base class for boundary conditions. |
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7 | Specific boundary conditions must provide values for |
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8 | the conserved_quantities |
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9 | |
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10 | A boundary object has one neighbour; the one it |
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11 | serves. |
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12 | """ |
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13 | |
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14 | def __init__(self): |
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15 | pass |
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16 | |
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17 | def evaluate(self, vol_id=None, edge_id=None): |
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18 | msg = 'Generic class Boundary must be subclassed' |
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19 | raise msg |
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20 | |
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21 | |
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22 | class Transmissive_boundary(Boundary): |
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23 | """Transmissive boundary returns same conserved quantities as |
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24 | those present in its neighbour volume. |
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25 | |
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26 | Underlying domain must be specified when boundary is instantiated |
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27 | """ |
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28 | |
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29 | def __init__(self, domain = None): |
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30 | Boundary.__init__(self) |
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31 | |
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32 | if domain is None: |
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33 | msg = 'Domain must be specified for transmissive boundary' |
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34 | raise msg |
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35 | |
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36 | self.domain = domain |
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37 | |
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38 | def __repr__(self): |
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39 | return 'Transmissive_boundary(%s)' %self.domain |
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40 | |
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41 | def evaluate(self, vol_id, edge_id): |
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42 | """Transmissive boundaries return the edge values |
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43 | of the volume they serve. |
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44 | """ |
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45 | |
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46 | q = self.domain.get_conserved_quantities(vol_id, edge = edge_id) |
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47 | return q |
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48 | |
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49 | |
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50 | class Dirichlet_boundary(Boundary): |
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51 | """Dirichlet boundary returns constant values for the |
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52 | conserved quantities |
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53 | """ |
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54 | |
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55 | |
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56 | def __init__(self, conserved_quantities=None): |
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57 | Boundary.__init__(self) |
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58 | |
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59 | if conserved_quantities is None: |
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60 | msg = 'Must specify one value for each conserved quantity' |
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61 | raise msg |
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62 | |
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63 | from Numeric import array, Float |
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64 | self.conserved_quantities=array(conserved_quantities).astype(Float) |
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65 | |
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66 | def __repr__(self): |
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67 | return 'Dirichlet boundary (%s)' %self.conserved_quantities |
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68 | |
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69 | def evaluate(self, vol_id=None, edge_id=None): |
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70 | return self.conserved_quantities |
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71 | |
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72 | |
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73 | |
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74 | class Time_boundary(Boundary): |
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75 | """Time dependent boundary returns values for the |
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76 | conserved quantities as a function of time. |
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77 | Must specify domain to get access to model time and a function f(t) |
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78 | which must return conserved quantities as a function time |
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79 | """ |
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80 | |
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81 | |
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82 | def __init__(self, domain = None, f = None): |
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83 | Boundary.__init__(self) |
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84 | |
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85 | try: |
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86 | q = f(0.0) |
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87 | except Exception, e: |
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88 | msg = 'Function for time boundary could not be executed:\n%s' %e |
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89 | raise msg |
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90 | |
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91 | |
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92 | from Numeric import array, Float |
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93 | try: |
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94 | q = array(q).astype(Float) |
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95 | except: |
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96 | msg = 'Return value from time boundary function could ' |
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97 | msg += 'not be converted into a Numeric array of floats.\n' |
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98 | msg += 'Specified function should return either list or array.' |
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99 | raise msg |
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100 | |
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101 | msg = 'ERROR: Time boundary function must return a 1d list or array ' |
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102 | assert len(q.shape) == 1, msg |
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103 | |
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104 | d = len(domain.conserved_quantities) |
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105 | msg = 'Return value for f must be a list or an array of length %d' %d |
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106 | assert len(q) == d, msg |
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107 | |
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108 | self.f = f |
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109 | self.domain = domain |
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110 | |
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111 | def __repr__(self): |
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112 | return 'Time boundary' |
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113 | |
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114 | def evaluate(self, vol_id=None, edge_id=None): |
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115 | return self.f(self.domain.time) |
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116 | |
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117 | |
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118 | class File_boundary_time(Boundary): |
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119 | """Boundary values obtained from file and interpolated. |
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120 | conserved quantities as a function of time. |
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121 | |
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122 | Assumes that file contains a time series. |
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123 | |
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124 | No spatial info assumed. |
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125 | """ |
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126 | |
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127 | #FIXME: Is this still necessary |
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128 | |
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129 | def __init__(self, filename, domain): |
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130 | import time |
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131 | from Numeric import array |
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132 | from config import time_format |
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133 | from util import File_function |
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134 | |
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135 | Boundary.__init__(self) |
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136 | |
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137 | self.F = File_function(filename, domain) |
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138 | self.domain = domain |
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139 | |
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140 | #Test |
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141 | q = self.F(0) |
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142 | |
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143 | d = len(domain.conserved_quantities) |
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144 | msg = 'Values specified in file must be a list or an array of length %d' %d |
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145 | assert len(q) == d, msg |
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146 | |
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147 | |
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148 | def __repr__(self): |
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149 | return 'File boundary' |
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150 | |
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151 | def evaluate(self, vol_id=None, edge_id=None): |
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152 | """Return linearly interpolated values based on domain.time |
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153 | |
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154 | vol_id and edge_id are ignored |
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155 | """ |
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156 | |
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157 | t = self.domain.time |
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158 | return self.F(t) |
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159 | |
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160 | |
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161 | |
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162 | |
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163 | class File_boundary(Boundary): |
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164 | """Boundary values obtained from file and interpolated. |
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165 | conserved quantities as a function of time. |
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166 | |
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167 | Assumes that file contains a time series and possibly |
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168 | also spatial info. |
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169 | See docstring for File_function in util.py for details about |
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170 | admissible file formats |
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171 | |
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172 | The full solution history is not exactly the same as if |
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173 | the models were coupled: |
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174 | File boundary must read and interpolate from *smoothed* version |
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175 | as stored in sww and cannot work with the discontinuos triangles. |
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176 | |
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177 | """ |
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178 | |
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179 | def __init__(self, filename, domain, verbose = False): |
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180 | import time |
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181 | from Numeric import array, zeros, Float |
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182 | from config import time_format |
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183 | from util import file_function |
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184 | |
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185 | Boundary.__init__(self) |
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186 | |
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187 | #Get x,y vertex coordinates for all triangles |
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188 | V = domain.vertex_coordinates |
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189 | |
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190 | #Compute midpoint coordinates for all boundary elements |
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191 | #Only a subset may be invoked when boundary is evaluated but |
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192 | #we don't know which ones at this stage since this object can be attached to |
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193 | #any tagged boundary later on. |
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194 | |
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195 | if verbose: print 'Find midpoint coordinates of entire boundary' |
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196 | self.midpoint_coordinates = zeros( (len(domain.boundary), 2), Float) |
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197 | boundary_keys = domain.boundary.keys() |
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198 | |
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199 | |
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200 | xllcorner = domain.geo_reference.get_xllcorner() |
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201 | yllcorner = domain.geo_reference.get_yllcorner() |
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202 | |
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203 | |
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204 | #Record ordering #FIXME: should this happen in domain.py? |
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205 | self.boundary_indices = {} |
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206 | |
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207 | for i, (vol_id, edge_id) in enumerate(boundary_keys): |
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208 | |
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209 | x0 = V[vol_id, 0]; y0 = V[vol_id, 1] |
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210 | x1 = V[vol_id, 2]; y1 = V[vol_id, 3] |
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211 | x2 = V[vol_id, 4]; y2 = V[vol_id, 5] |
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212 | |
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213 | #Compute midpoints |
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214 | if edge_id == 0: m = array([(x1 + x2)/2, (y1 + y2)/2]) |
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215 | if edge_id == 1: m = array([(x0 + x2)/2, (y0 + y2)/2]) |
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216 | if edge_id == 2: m = array([(x1 + x0)/2, (y1 + y0)/2]) |
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217 | |
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218 | #Convert to absolute UTM coordinates |
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219 | m[0] += xllcorner |
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220 | m[1] += yllcorner |
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221 | |
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222 | #Register point and index |
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223 | self.midpoint_coordinates[i,:] = m |
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224 | self.boundary_indices[(vol_id, edge_id)] = i |
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225 | |
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226 | |
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227 | if verbose: print 'Initialise file_function' |
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228 | self.F = file_function(filename, domain, |
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229 | interpolation_points=self.midpoint_coordinates, |
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230 | verbose = verbose) |
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231 | self.domain = domain |
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232 | |
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233 | #Test |
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234 | q = self.F(0, point_id=0) |
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235 | |
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236 | d = len(domain.conserved_quantities) |
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237 | msg = 'Values specified in file %s must be ' %filename |
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238 | msg += ' a list or an array of length %d' %d |
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239 | assert len(q) == d, msg |
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240 | |
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241 | |
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242 | def __repr__(self): |
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243 | return 'File boundary' |
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244 | |
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245 | |
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246 | def evaluate(self, vol_id=None, edge_id=None): |
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247 | """Return linearly interpolated values based on domain.time |
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248 | |
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249 | vol_id and edge_id are ignored |
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250 | """ |
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251 | |
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252 | t = self.domain.time |
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253 | |
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254 | if vol_id is not None and edge_id is not None: |
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255 | i = self.boundary_indices[ vol_id, edge_id ] |
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256 | return self.F(t, point_id = i) |
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257 | else: |
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258 | #raise 'Boundary call without point_id not implemented' |
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259 | #FIXME: What should the semantics be? |
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260 | return self.F(t) |
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261 | |
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262 | |
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263 | |
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264 | |
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265 | |
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266 | |
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267 | |
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268 | |
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269 | #THIS FAR (10/8/4) |
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270 | class Connective_boundary(Boundary): |
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271 | """Connective boundary returns values for the |
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272 | conserved quantities from a volume as defined by a connection table |
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273 | mapping between tuples of (volume id, face id) for volumes that |
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274 | have their boundaries connected. |
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275 | |
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276 | FIXME: Perhaps include possibility of mapping between |
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277 | different domains as well |
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278 | |
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279 | FIXME: In case of shallow water we may want to have a |
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280 | special version that casts this in terms of height rather than stage |
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281 | """ |
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282 | |
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283 | |
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284 | def __init__(self, table): |
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285 | from domain import Volume |
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286 | |
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287 | Boundary.__init__(self) |
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288 | |
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289 | self.connection_table = table |
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290 | self.Volume = Volume |
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291 | |
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292 | def __repr__(self): |
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293 | return 'Connective boundary' |
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294 | |
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295 | #FIXME: IF we ever need to get field_values from connected volume, |
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296 | #that method could be overridden here (using same idea as in |
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297 | #get_conserved_quantities |
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298 | #def get_field_values() |
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299 | |
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300 | def get_conserved_quantities(self, volume, face=0): |
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301 | |
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302 | id = volume.id |
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303 | if self.connection_table.has_key((id, face)): |
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304 | other_id, other_face = self.connection_table[(id, face)] |
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305 | |
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306 | other_volume = self.Volume.instances[other_id] |
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307 | cmd = 'q = other_volume.conserved_quantities_face%d' %face; |
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308 | exec(cmd) |
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309 | return q |
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310 | else: |
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311 | msg = 'Volume, face tuple ($d, %d) has not been mapped'\ |
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312 | %(id, face) |
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313 | raise msg |
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314 | |
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315 | |
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316 | |
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317 | |
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318 | |
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319 | #FIXME: Add a boundary with a general function of x,y, and t |
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320 | |
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321 | #FIXME: Add periodic boundaries e.g.: |
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322 | # Attempt at periodic conditions from advection_spik. Remember this |
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323 | # |
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324 | #first = 2*(N-1)*N |
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325 | #for i in range(1,2*N+1,2): |
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326 | # k = first + i-1# |
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327 | # |
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328 | # print i,k |
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329 | # |
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330 | # domain[i].faces[2].neighbour = domain[k].faces[1] |
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331 | # domain[k].faces[1].neighbour = domain[i].faces[2] |
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332 | |
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333 | |
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334 | |
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335 | class General_boundary(Boundary): |
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336 | """General boundary which can compute conserved quantities based on |
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337 | their previous value, conserved quantities of its neighbour and model time. |
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338 | |
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339 | Must specify initial conserved quantities, |
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340 | neighbour, |
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341 | domain to get access to model time |
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342 | a function f(q_old, neighbours_q, t) which must return |
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343 | new conserved quantities q as a function time |
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344 | |
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345 | FIXME: COMPLETE UNTESTED - JUST AN IDEA |
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346 | """ |
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347 | |
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348 | def __init__(self, neighbour=None, conserved_quantities=None, domain=None, f=None): |
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349 | Boundary.__init__(self, neighbour=neighbour, conserved_quantities=conserved_quantities) |
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350 | |
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351 | self.f = f |
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352 | self.domain = domain |
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353 | |
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354 | |
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355 | def get_conserved_quantities(self, volume=None, face=0): |
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356 | return self.f(self.conserved_quantities, |
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357 | neighbour.conserved_quantities, |
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358 | self.domain.time) |
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359 | |
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360 | |
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361 | |
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362 | |
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363 | |
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364 | class File_boundary_old(Boundary): |
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365 | """Boundary values obtained from file and interpolated. |
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366 | conserved quantities as a function of time. |
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367 | |
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368 | Assumes that file contains a time series. |
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369 | |
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370 | No spatial info assumed. |
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371 | """ |
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372 | |
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373 | |
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374 | def __init__(self, domain = None, filename = None): |
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375 | import time |
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376 | from Numeric import array |
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377 | from config import time_format |
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378 | |
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379 | Boundary.__init__(self) |
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380 | |
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381 | |
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382 | try: |
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383 | fid = open(filename) |
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384 | except Exception, e: |
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385 | msg = 'Boundary file %s could not be opened: %s\n' %(filename, e) |
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386 | raise msg |
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387 | |
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388 | |
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389 | line = fid.readline() |
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390 | fid.close() |
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391 | fields = line.split(',') |
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392 | msg = 'File %s must have the format date, values' |
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393 | assert len(fields) == 2, msg |
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394 | |
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395 | try: |
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396 | starttime = time.mktime(time.strptime(fields[0], time_format)) |
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397 | except ValueError: |
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398 | msg = 'First field in file %s must be' %filename |
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399 | msg += ' date-time with format %s.\n' %time_format |
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400 | msg += 'I got %s instead.' %fields[0] |
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401 | raise msg |
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402 | |
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403 | #Split values |
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404 | values = [] |
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405 | for value in fields[1].split(): |
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406 | values.append(float(value)) |
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407 | |
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408 | q = array(values) |
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409 | |
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410 | msg = 'ERROR: File boundary function must return a 1d list or array ' |
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411 | assert len(q.shape) == 1, msg |
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412 | |
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413 | d = len(domain.conserved_quantities) |
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414 | msg = 'Values specified in file must be a list or an array of length %d' %d |
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415 | assert len(q) == d, msg |
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416 | |
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417 | self.filename = filename |
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418 | self.domain = domain |
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419 | self.starttime = starttime |
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420 | |
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421 | if domain.starttime is None: |
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422 | domain.starttime = starttime |
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423 | else: |
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424 | msg = 'Start time as specified in domain (%s) is earlier ' |
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425 | 'than the starttime of file %s: %s'\ |
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426 | %(domain.starttime, self.filename, self.starttime) |
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427 | if self.starttime > domain.starttime: |
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428 | raise msg |
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429 | |
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430 | self.read_time_boundary() #Now read all times in. |
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431 | |
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432 | |
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433 | def read_time_boundary(self): |
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434 | from Numeric import zeros, Float, alltrue |
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435 | from config import time_format |
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436 | import time |
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437 | |
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438 | fid = open(self.filename) |
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439 | lines = fid.readlines() |
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440 | fid.close() |
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441 | |
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442 | N = len(lines) |
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443 | d = len(self.domain.conserved_quantities) |
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444 | |
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445 | T = zeros(N, Float) |
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446 | Q = zeros((N, d), Float) |
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447 | |
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448 | |
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449 | for i, line in enumerate(lines): |
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450 | fields = line.split(',') |
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451 | real_time = time.mktime(time.strptime(fields[0], time_format)) |
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452 | |
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453 | T[i] = real_time - self.starttime |
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454 | |
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455 | |
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456 | for j, value in enumerate(fields[1].split()): |
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457 | Q[i, j] = float(value) |
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458 | |
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459 | msg = 'Time boundary must list time as a monotonuosly ' |
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460 | msg += 'increasing sequence' |
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461 | |
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462 | assert alltrue( T[1:] - T[:-1] > 0 ), msg |
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463 | |
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464 | self.T = T #Time |
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465 | self.Q = Q #Boundary values |
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466 | self.index = 0 #Initial index |
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467 | |
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468 | |
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469 | def __repr__(self): |
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470 | return 'File boundary' |
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471 | |
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472 | def evaluate(self, vol_id=None, edge_id=None): |
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473 | """Return linearly interpolated values based on domain.time |
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474 | """ |
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475 | |
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476 | t = self.domain.time |
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477 | |
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478 | msg = 'Time given in File boundary does not match model time' |
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479 | if t < self.T[0]: raise msg |
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480 | if t > self.T[-1]: raise msg |
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481 | |
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482 | oldindex = self.index |
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483 | |
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484 | #Find slot |
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485 | while t > self.T[self.index]: self.index += 1 |
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486 | while t < self.T[self.index]: self.index -= 1 |
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487 | |
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488 | #if oldindex != self.index: |
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489 | # print 'Changing from %d to %d' %(oldindex, self.index) |
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490 | |
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491 | |
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492 | #t is now between index and index+1 |
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493 | ratio = (t - self.T[self.index])/\ |
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494 | (self.T[self.index+1] - self.T[self.index]) |
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495 | |
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496 | return self.Q[self.index,:] +\ |
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497 | ratio*(self.Q[self.index+1,:] - self.Q[self.index,:]) |
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498 | |
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499 | |
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500 | |
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501 | |
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