1 | \documentclass{manual} |
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2 | |
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3 | \title{ANUGA Installation Guide} |
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4 | |
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5 | %\author{Ole Nielsen, Duncan Gray, Jane Sexton} |
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6 | |
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7 | \usepackage{graphicx} |
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8 | |
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9 | |
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10 | % Please at least include a long-lived email address; |
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11 | % the rest is at your discretion. |
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12 | \authoraddress{Geoscience Australia \\ |
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13 | Email: \email{nariman.habili@ga.gov.au} |
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14 | } |
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15 | |
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16 | %Draft date |
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17 | \date{\today} % update before release! |
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18 | % Use an explicit date so that reformatting |
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19 | % doesn't cause a new date to be used. Setting |
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20 | % the date to \today can be used during draft |
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21 | % stages to make it easier to handle versions. |
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22 | |
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23 | |
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24 | \input{version} % Get version info - this file may be modified by |
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25 | % update_anuga_user_manual.py - if not a dummy |
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26 | % will be used. |
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27 | |
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28 | |
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29 | \makeindex % tell \index to actually write the .idx file |
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30 | %\makemodindex % If this contains a lot of module sections. |
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31 | |
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32 | |
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33 | |
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34 | \begin{document} |
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35 | \maketitle |
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36 | |
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37 | |
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38 | |
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39 | % This makes the contents more accessible from the front page of the HTML. |
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40 | \ifhtml |
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41 | \chapter*{Front Matter\label{front}} |
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42 | \fi |
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43 | |
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44 | |
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45 | |
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46 | |
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47 | \chapter{Introduction} |
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48 | |
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49 | This document outlines the procedure for installing the Anuga toolbox. |
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50 | All components are licensed as open source and readily available from the net. |
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51 | It is assumed that the reader is familiar with the Python programming language |
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52 | and the process of downloading, installing and unpacking files into directories. |
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53 | |
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54 | |
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55 | \section{System requirements} |
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56 | \label{sec:requirements} |
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57 | |
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58 | To run ANUGA you will need a Windows PC (XP or Vista) or a Linux PC with at |
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59 | least 512MB RAM. As ANUGA is a memory-intensive numerical system, more memory is better than less. |
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60 | |
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61 | The viewer (Windows only) requires a graphics adapter that |
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62 | is OpenGL compatible. It has been tested with ATI FireGL X1 cards |
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63 | and the NVIDIA family. It may not work with other cards such as those from the |
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64 | Intel(R) 82915G Express chipset family. |
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65 | |
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66 | The instructions below are written for the numpy version of ANUGA. ANUGA changed from |
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67 | relying on the Numeric package to the numpy package early in July, 2009. If you have a Numeric ANUGA, |
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68 | you should refer to the installation instructions for that version. The last Numeric version of |
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69 | ANUGA had a build number of 7163. |
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70 | |
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71 | Where the text below refers to a specific package file such as \code{python-2.5.msi} you will find that |
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72 | file in a download area linked through the \emph{numpy_support_software} link on the page |
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73 | \url{https://datamining.anu.edu.au/anuga/wiki/NumpyInstall}. |
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74 | |
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75 | |
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76 | \section{Installation} |
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77 | |
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78 | Below are the install procedures for Windows XP, Windows Vista (both 32 bit) and Linux (32 and 64 bit). |
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79 | |
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80 | \subsection{Quick install - Windows XP (32 bit)} |
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81 | \label{sec:winxp} |
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82 | |
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83 | If you already have previous versions of Python, ANUGA support software or the ANUGA source code installed |
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84 | on the target machine, start off by uninstalling them. Next, download the latest version of the ANUGA |
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85 | Windows installer from \url{http://sourceforge.net/projects/anuga/files/}. The Windows installer will |
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86 | install Python, MingW (select the "Minimal" install), NumPy, NetCDF, Scientific Python, Matplotlib, the |
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87 | ANUGA source code and the viewer (animate). Note that you will need an internet connection to install MingW. |
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88 | |
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89 | After all the necessary packages have been installed, the installer will proceed to compile the ANUGA C code, |
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90 | run the test suite (optional) and then run a series of validation examples (optional). This may take some time. |
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91 | Try the demonstrations provided in the ANUGA directory \code{anuga\_demos} (discussed in the ANUGA user manual at |
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92 | \url{http://datamining.anu.edu.au/\%7Eole/anuga/user\%5Fmanual/anuga\%5Fuser\%5Fmanual.pdf}) |
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93 | and view the resulting \code{.sww} files with the ANUGA viewer. |
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94 | |
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95 | %This procedure assumes that you do not have python installed on the target machine. |
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96 | %If you do have a python installed already then skip the installation of python as |
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97 | %long as you have version 2.5 or later installed. |
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98 | % |
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99 | %\begin{itemize} |
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100 | % \item Install the support software, in order. |
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101 | % \begin{enumerate} |
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102 | % \item Execute \code{python-2.5.4.msi} to install python. |
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103 | % |
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104 | % \item Install MinGW from \code{MinGW-5.1.4.exe}. Install components: |
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105 | % \begin{enumerate} |
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106 | % \item MinGW base tools |
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107 | % \item g++ compiler |
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108 | % \item MinGW Make |
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109 | % \end{enumerate} |
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110 | % Note that you will need an internet connection for the above install. |
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111 | % |
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112 | % \item Execute \code{numpy-1.3.0-win32-superpack-python2.5.exe} to install numpy. |
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113 | % |
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114 | % \item Execute \code{netCDF_binary_4.0.exe} to install NetCDF. |
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115 | % |
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116 | % \item Execute \code{ScientificPython-2.9.0.win32-py2.5.exe} to install Scientific Python. |
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117 | % |
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118 | % \item Execute \code{matplotlib-0.98.5.2.win32-py2.5.exe} to install matplotlib. |
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119 | % \end{enumerate} |
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120 | % |
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121 | % \item Add the following to the end of the PATH environment variable: |
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122 | % \begin{verbatim};C:\Python25;C:\MingW\bin;C:\netcdf4\bin\end{verbatim} |
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123 | % For details on how to do this under Windows please refer to Appendix \ref{sec:setwindowspath}. |
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124 | %\end{itemize} |
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125 | % |
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126 | %\subsubsection{ANUGA Installation} |
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127 | %\label{sec:ANUGA} |
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128 | % |
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129 | %\begin{itemize} |
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130 | % \item Unpack the ANUGA source code (\code{anuga-1.0_xxxx.tgz})\footnote{Internet Explorer has the habit of renaming the .tgz files to .gz - |
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131 | % the remedy is to rename them back or use another browser such as Firefox.} |
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132 | % in the python site-packages directory \code{C:$\backslash$Python25$\backslash$Lib$\backslash$site-packages}. |
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133 | % This is often done in Windows by double clicking on the \code{.tgz} file and then 'browse to' the destination directory. |
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134 | % |
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135 | % \item In the ANUGA root directory (\code{C:$\backslash$Python25$\backslash$Lib$\backslash$site-packages$\backslash$anuga}), |
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136 | % run the compilation script (either from the commandline or by running it in IDLE): |
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137 | % \begin{verbatim}python compile_all.py\end{verbatim} |
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138 | % |
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139 | % \item In the ANUGA root directory (\code{C:$\backslash$Python25$\backslash$Lib$\backslash$site-packages$\backslash$anuga}), |
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140 | % run the test suite (either from the commandline or by running it in IDLE): |
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141 | % \begin{verbatim}python test_all.py\end{verbatim} ANUGA has been succesfully installed if the tests pass. |
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142 | % |
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143 | % \item To verify that ANUGA succesfully reproduces a series of validation examples, go |
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144 | % to the directory |
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145 | % \linebreak |
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146 | % \code{anuga_validation$\backslash$automated_validation_tests} under the ANUGA root directory where you can run: |
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147 | % \begin{verbatim}python validate_all.py\end{verbatim} |
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148 | % This may take some time. |
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149 | % |
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150 | % \item To install the ANUGA viewer: |
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151 | % \begin{enumerate} |
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152 | % \item Unpack the distribution (\code{anuga_viewer_1.0.tgz}) into: |
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153 | % \begin{verbatim}C:\Program Files\end{verbatim} |
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154 | % |
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155 | % \item Double click on the test file: |
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156 | % \begin{verbatim}C:\Program Files\anuga_viewer\cylinders.sww\end{verbatim} |
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157 | % |
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158 | % \item Associate \code{.sww} files with the executable: |
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159 | % \begin{verbatim}C:\Program Files\anuga_viewer\animate.exe\end{verbatim} |
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160 | % For details on how to do this under Windows please refer to Appendix \ref{sec:assocanimatesww}. |
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161 | % \end{enumerate} |
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162 | % |
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163 | % Try the demonstrations provided in the ANUGA directory \code{anuga\_demos} |
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164 | % (discussed in the ANUGA user manual at |
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165 | % \url{http://datamining.anu.edu.au/\%7Eole/anuga/user\%5Fmanual/anuga\%5Fuser\%5Fmanual.pdf}) |
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166 | % and view the resulting \code{.sww} files with the ANUGA viewer. |
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167 | %\end{itemize} |
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168 | |
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169 | |
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170 | %To run the ANUGA against the Okushiri Island wave tank validation dataset |
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171 | %(\url{http://www.cee.cornell.edu/longwave}) |
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172 | %go to \code{anuga_validation} |
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173 | % into |
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174 | %any directory and run the scripts \code{create_okushiri.py}, |
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175 | %\code{run_okushiri.py} and \code{compare_timeseries.py}. See also the |
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176 | %\code{README.txt} file that comes with the validation scripts for more |
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177 | %details. |
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178 | |
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179 | \subsection{Quick install - Windows Vista} |
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180 | \label{sec:winvista} |
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181 | |
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182 | The installation of the support software and the ANUGA software should be the same as for Windows XP above. |
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183 | The installation and use of ANUGA under Windows Vista has not been heavily tested. Feedback on any aspect |
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184 | of using ANUGA under Vista is welcomed. |
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185 | |
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186 | \subsection{Quick install - Linux} |
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187 | \label{sec:linux} |
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188 | |
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189 | The procedure to install onto a Linux platform is targetted at a Debian-like Linux, such as Ubuntu. |
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190 | If you use another Linux the overall procedure should be followed, although the details will vary. |
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191 | |
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192 | The steps below assume that you do not have python installed on the target machine. |
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193 | If you do have a python installed already then skip the installation of python as |
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194 | long as you have version 2.5 or later. |
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195 | |
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196 | Note that even if you already have python installed you should still check if things like |
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197 | \code{python-dev} and \code{python-profiler} need to be installed. |
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198 | |
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199 | \subsubsection{Support Software - Linux 32 bit} |
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200 | \label{sec:linux32bit} |
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201 | |
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202 | Install support software (in order): |
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203 | \begin{enumerate} |
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204 | \item Install the python development environment, either through Synaptic or by: |
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205 | \begin{verbatim}sudo apt-get install python python-dev python-profiler\end{verbatim} |
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206 | If you already have python 2.5 or later installed, don't include \code{python} above. |
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207 | |
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208 | \item Install g++, either through Synaptic or by: |
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209 | \begin{verbatim}sudo apt-get install g++\end{verbatim} |
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210 | |
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211 | \item Install the numpy package, either through Synaptic or by: |
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212 | \begin{verbatim}sudo apt-get install python-numpy\end{verbatim} |
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213 | |
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214 | \item Install the NetCDF package from the .tar.gz file: |
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215 | \begin{verbatim}tar xzf netcdf.tar.gz |
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216 | cd netcdf-4.0.1 |
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217 | ./configure |
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218 | make check |
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219 | sudo make install |
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220 | cd\end{verbatim} |
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221 | |
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222 | \item Install the ScientificPython package from the .tar.gz file: |
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223 | \begin{verbatim}tar xzf ScientificPython-2.9.0.tar.gz |
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224 | cd ScientificPython-2.9.0 |
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225 | python setup.py build --numpy |
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226 | sudo python setup.py install |
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227 | cd\end{verbatim} |
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228 | |
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229 | \item Install matplotlib, either through Synaptic or by: |
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230 | \begin{verbatim}sudo apt-get install python-matplotlib\end{verbatim} |
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231 | \end{enumerate} |
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232 | |
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233 | \subsubsection{Support Software - Linux 64 bit} |
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234 | \label{sec:linux64bit} |
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235 | |
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236 | Install support software (in order): |
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237 | \begin{enumerate} |
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238 | \item Install the python development environment, either through Synaptic or by: |
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239 | \begin{verbatim}sudo apt-get install python python-dev python-profiler\end{verbatim} |
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240 | If you already have python 2.5 or later installed, don't include \code{python} above. |
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241 | |
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242 | \item Install g++, either through Synaptic or by: |
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243 | \begin{verbatim}sudo apt-get install g++\end{verbatim} |
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244 | |
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245 | \item Define a CFLAGS value: |
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246 | \begin{verbatim}export CFLAGS=-fPIC\end{verbatim} |
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247 | |
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248 | \item Install the numpy package, either through Synaptic or by: |
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249 | \begin{verbatim}sudo apt-get install python-numpy\end{verbatim} |
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250 | |
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251 | \item Install the NetCDF package from the .tar.gz file: |
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252 | \begin{verbatim}tar xzf netcdf.tar.gz |
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253 | cd netcdf-4.0.1 |
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254 | ./configure |
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255 | make check |
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256 | sudo make install |
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257 | cd\end{verbatim} |
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258 | |
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259 | \item Install the ScientificPython package from the .tar.gz file: |
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260 | \begin{verbatim}tar xzf ScientificPython-2.9.0.tar.gz |
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261 | cd ScientificPython-2.9.0 |
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262 | python setup.py build --numpy |
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263 | sudo python setup.py install |
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264 | cd\end{verbatim} |
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265 | |
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266 | \item Install matplotlib, either through Synaptic or by: |
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267 | \begin{verbatim}sudo apt-get install python-matplotlib\end{verbatim} |
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268 | \end{enumerate} |
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269 | |
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270 | \subsubsection{ANUGA Installation - 32 or 64 bit} |
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271 | \label{sec:ANUGA32-64bit} |
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272 | |
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273 | \begin{enumerate} |
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274 | \item Get the ANUGA source from \url{http://sourceforge.net/projects/anuga} (\code{anuga-1.0_5789.tgz} say), |
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275 | and expand it into the python site-packages directory \code{/usr/lib/python2.5/site-packages}. |
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276 | In the unpacked ANUGA directory \code{/usr/lib/python2.5/site-packages/anuga} run the command: |
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277 | \begin{verbatim}sudo python compile_all.py\end{verbatim} |
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278 | |
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279 | \item In the ANUGA root directory (\code{/usr/lib/python2.5/site-packages/anuga}) |
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280 | run the test suite: |
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281 | \begin{verbatim}python test_all.py\end{verbatim} ANUGA has been succesfully installed if the tests pass. |
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282 | |
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283 | \item To verify that ANUGA succesfully reproduces a series of validation examples, go |
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284 | to the directory |
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285 | \linebreak |
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286 | \code{/usr/lib/python2.5/site-packages/anuga_validation/automated_validation_tests} |
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287 | where you can run validation tests to ensure the correct running of ANUGA: |
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288 | \begin{verbatim}python validate_all.py\end{verbatim} |
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289 | This may take some time. |
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290 | \end{enumerate} |
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291 | |
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292 | \section{Optional but recommended software} |
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293 | This software is not required to run the ANUGA toolbox, but it is recommended. |
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294 | \begin{itemize} |
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295 | \item psyco. Speeds up ANUGA by about 30\%, so is strongly recommended. |
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296 | Under Ubuntu install either through Synaptic or by: |
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297 | \begin{verbatim}sudo apt-get install python-psyco\end{verbatim} |
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298 | Under Windows install the file \code{psyco-1.6.win32-py25.exe} |
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299 | which you can find on the \url{http://psyco.sourceforge.net/download.html} page. |
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300 | |
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301 | \item VTK. The Visualization Toolkit. Under Ubuntu install either through Synaptic or by: |
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302 | \begin{verbatim}sudo apt-get install python-vtk\end{verbatim} |
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303 | Under Windows install the file \code{vtk-5.4.2-win32.exe} |
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304 | from the \url{http://www.vtk.org/VTK/resources/software.html} page. |
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305 | \end{itemize} |
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306 | |
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307 | |
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308 | |
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309 | \section{Testing} |
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310 | |
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311 | In the ANUGA root directory, run the test suite: |
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312 | \begin{verbatim} |
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313 | python test_all.py |
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314 | \end{verbatim} |
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315 | ANUGA has been succesfully installed if the tests pass as follows: |
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316 | \begin{verbatim} |
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317 | ... |
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318 | test_data_manager.py |
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319 | test_interpolate_sww.py |
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320 | test_mesh.py |
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321 | test_mesh_interface.py |
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322 | test_triangmodule.py |
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323 | test_triangmoduleII.py |
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324 | test_advection.py |
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325 | ................................................................................. |
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326 | ................................................................................. |
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327 | ................................................................................. |
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328 | ................................................................................. |
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329 | ................................................................................. |
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330 | ................................................................................. |
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331 | ................................................................................. |
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332 | .......................... |
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333 | ---------------------------------------------------------------------- |
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334 | Ran 593 tests in 42.712s |
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335 | |
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336 | OK |
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337 | \end{verbatim} |
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338 | |
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339 | Note that if psycho is not installed, a number of psycho related warnings will appear. These warnings |
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340 | can be ignored. |
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341 | |
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342 | %\section{Other stuff to be included} |
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343 | % |
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344 | %\begin{verbatim} |
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345 | %Install tortoise from downloads (ITs didn't integrate wih explorer). |
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346 | %In settings set proxy to proxy.agso.gov.au 8080 |
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347 | %% |
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348 | % |
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349 | %Install swollen from latest distro (in subversion) |
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350 | % |
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351 | % |
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352 | %\end{verbatim} |
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353 | |
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354 | |
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355 | \appendix |
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356 | \chapter{Miscellaneous procedures} |
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357 | \section{Setting the PATH on Windows} |
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358 | \label{sec:setwindowspath} |
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359 | |
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360 | The Windows one-click installer should automatically set the necessary PATH |
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361 | environment "System variables". However, in case you do not have |
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362 | permission to modify the system variable, then the method of setting the PATH environment "User variable" |
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363 | for Windows XP is shown here. Setting the variable for Windows Vista should be similar. |
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364 | |
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365 | \setlength\fboxsep{0pt} |
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366 | \setlength\fboxrule{1.0pt} |
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367 | |
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368 | First, open the Control Panel: |
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369 | \begin{figure}[ht] |
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370 | \centerline{\fbox{\includegraphics[scale=0.75]{installgraphics/winsetpath1.png}}} |
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371 | % \caption{Run Control Panel from the Start menu} |
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372 | \label{fig:winsetpath1} |
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373 | \end{figure} |
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374 | |
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375 | Next, start the System applet: |
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376 | \begin{figure}[ht] |
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377 | \centerline{\fbox{\includegraphics[scale=0.75]{installgraphics/winsetpath2.png}}} |
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378 | % \caption{Start the System applet} |
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379 | \label{fig:winsetpath2} |
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380 | \end{figure} |
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381 | |
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382 | \pagebreak |
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383 | |
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384 | Select the \code{Advanced} tab in the System Properties window: |
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385 | \begin{figure}[ht] |
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386 | \centerline{\includegraphics[scale=0.5]{installgraphics/winsetpath3.png}} |
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387 | % \caption{Select the Advanced tab} |
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388 | \label{fig:winsetpath3} |
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389 | \end{figure} |
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390 | |
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391 | %\pagebreak |
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392 | |
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393 | Press the \code{Environment Variables} button in the \code{Advanced} tab: |
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394 | \begin{figure}[ht] |
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395 | \centerline{\includegraphics[scale=0.5]{installgraphics/winsetpath4.png}} |
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396 | % \caption{Press the Environment Variables button} |
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397 | \label{fig:winsetpath4} |
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398 | \end{figure} |
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399 | |
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400 | \pagebreak |
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401 | |
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402 | If the \code{PATH} variable is not defined in the 'User variables' or 'System variables' windows, |
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403 | press the \code{New} button in either of the two windows (for a personal machine, choose the 'System variables' window). |
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404 | |
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405 | If \code{PATH} already exists in the 'User variable' or 'System variables' window, |
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406 | select the row with the \code{PATH} variable name in the appropriate window |
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407 | and press the \code{Edit} button next to the \code{New} button in that window: |
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408 | \begin{figure}[ht] |
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409 | \centerline{\includegraphics[scale=0.5]{installgraphics/winsetpath5.png}} |
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410 | % \caption{Press the New button} |
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411 | \label{fig:winsetpath5} |
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412 | \end{figure} |
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413 | |
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414 | %\pagebreak |
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415 | |
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416 | You will be shown the editor window whichever button you pressed in the above step. If the \code{Variable name} box is empty |
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417 | type in the name \code{PATH}. In the \code{Variable value} box type the value you want the \code{PATH} variable to have. If there |
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418 | is already some text in the box, place your additional value at the front of the existing value, not forgetting to terminate your additional |
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419 | string with the ';' character. The final value string must be a series of directory names seperated by ';' characters: |
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420 | \begin{figure}[ht] |
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421 | \centerline{\includegraphics[scale=0.75]{installgraphics/winsetpath6.png}} |
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422 | % \caption{Modifying the PATH value} |
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423 | \label{fig:winsetpath6} |
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424 | \end{figure} |
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425 | |
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426 | When you are finished, press the \code{OK} button and exit from the applet. |
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427 | |
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428 | \pagebreak |
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429 | |
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430 | \section{Associating animate.exe with a .sww file} |
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431 | \label{sec:assocanimatesww} |
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432 | |
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433 | The one-click installer should associate animate.exe with .sww files automatically. However, the method of associating |
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434 | \code{animate.exe} with a \code{.sww} file manually is shown here for Windows XP. |
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435 | A similar process should work for Windows Vista. |
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436 | |
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437 | Double left-click on any \code{.sww} file. This brings up a dialog because Windows doesn't know how to open the file: |
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438 | \begin{figure}[ht] |
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439 | \centerline{\fbox{\includegraphics[scale=0.5]{installgraphics/winassoc1.png}}} |
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440 | % \caption{Try to open the .sww file} |
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441 | \label{fig:winassoc1} |
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442 | \end{figure} |
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443 | |
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444 | Select the "\code{Select the program from a list}" radiobutton and press the \code{OK} button: |
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445 | \begin{figure}[ht] |
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446 | \centerline{\includegraphics[scale=0.5]{installgraphics/winassoc2.png}} |
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447 | % \caption{Select the program from a list} |
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448 | \label{fig:winassoc2} |
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449 | \end{figure} |
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450 | |
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451 | \pagebreak |
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452 | |
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453 | Press the \code{Browse...} button to find the \code{animate.exe} program: |
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454 | \begin{figure}[ht] |
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455 | \centerline{\includegraphics[scale=0.5]{installgraphics/winassoc3.png}} |
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456 | % \caption{Find animate.exe program} |
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457 | \label{fig:winassoc3} |
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458 | \end{figure} |
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459 | |
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460 | Navigate to the \code{C:$\backslash$Program Files$\backslash$anuga_viewer} directory: |
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461 | \begin{figure}[ht] |
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462 | \centerline{\includegraphics[scale=0.5]{installgraphics/winassoc4.png}} |
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463 | % \caption{Navigate into Program Files|anuga_viewer directory} |
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464 | \label{fig:winassoc4} |
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465 | \end{figure} |
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466 | |
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467 | \pagebreak |
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468 | |
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469 | Select \code{animate.exe} and press the \code{Open} button: |
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470 | \begin{figure}[ht] |
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471 | \centerline{\includegraphics[scale=0.5]{installgraphics/winassoc5.png}} |
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472 | % \caption{Select the animate.exe program press Open} |
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473 | \label{fig:winassoc5} |
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474 | \end{figure} |
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475 | |
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476 | Finally, press the \code{OK} button: |
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477 | \begin{figure}[ht] |
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478 | \centerline{\includegraphics[scale=0.5]{installgraphics/winassoc6.png}} |
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479 | % \caption{Press the OK button} |
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480 | \label{fig:winassoc6} |
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481 | \end{figure} |
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482 | |
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483 | |
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484 | \end{document} |
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