[7910] | 1 | """boundary.py - Classes for implementing boundary conditions |
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| 2 | """ |
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| 3 | |
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| 4 | |
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| 5 | class Boundary: |
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| 6 | """Base class for boundary conditions. |
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| 7 | Specific boundary conditions must provide values for |
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| 8 | the conserved_quantities |
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| 9 | |
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| 10 | A boundary object has one neighbour; the one it |
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| 11 | serves. |
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| 12 | """ |
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| 13 | |
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| 14 | def __init__(self): |
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| 15 | pass |
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| 16 | |
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| 17 | def evaluate(self, vol_id=None, edge_id=None): |
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| 18 | msg = 'Generic class Boundary must be subclassed' |
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| 19 | raise msg |
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| 20 | |
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| 21 | class Reflective_boundary(Boundary): |
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| 22 | """Reflective boundary returns same conserved quantities as |
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| 23 | those present in its neighbour volume but reflected. |
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| 24 | |
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| 25 | This class is specific to the shallow water equation as it |
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| 26 | works with the momentum quantities assumed to be the second |
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| 27 | and third conserved quantities. |
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| 28 | """ |
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| 29 | |
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| 30 | def __init__(self, domain = None): |
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| 31 | Boundary.__init__(self) |
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| 32 | |
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| 33 | if domain is None: |
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| 34 | msg = 'Domain must be specified for reflective boundary' |
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| 35 | raise msg |
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| 36 | |
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| 37 | #Handy shorthands |
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| 38 | self.normals = domain.normals |
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| 39 | self.stage = domain.quantities['stage'].vertex_values |
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| 40 | self.xmom = domain.quantities['xmomentum'].vertex_values |
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| 41 | self.bed = domain.quantities['elevation'].vertex_values |
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| 42 | self.height = domain.quantities['height'].vertex_values |
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| 43 | self.velocity = domain.quantities['velocity'].vertex_values |
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| 44 | |
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| 45 | from Numeric import Float |
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| 46 | from numpy import zeros |
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| 47 | self.evolved_quantities = zeros(5, Float) |
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| 48 | |
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| 49 | def __repr__(self): |
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| 50 | return 'Reflective_boundary' |
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| 51 | |
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| 52 | def evaluate(self, vol_id, edge_id): |
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| 53 | """Reflective boundaries reverses the outward momentum |
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| 54 | of the volume they serve. |
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| 55 | """ |
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| 56 | q = self.evolved_quantities |
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| 57 | q[0] = self.stage[vol_id, edge_id] |
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| 58 | q[1] = -self.xmom[vol_id, edge_id] |
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| 59 | q[2] = self.bed[vol_id, edge_id] |
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| 60 | q[3] = self.height[vol_id, edge_id] |
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| 61 | q[4] = -self.velocity[vol_id, edge_id] |
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| 62 | return q |
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| 63 | |
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| 64 | |
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| 65 | class Transmissive_boundary(Boundary): |
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| 66 | """Transmissive boundary returns same conserved quantities as |
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| 67 | those present in its neighbour volume. |
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| 68 | |
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| 69 | Underlying domain must be specified when boundary is instantiated |
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| 70 | """ |
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| 71 | |
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| 72 | def __init__(self, domain = None): |
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| 73 | Boundary.__init__(self) |
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| 74 | |
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| 75 | if domain is None: |
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| 76 | msg = 'Domain must be specified for transmissive boundary' |
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| 77 | raise msg |
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| 78 | |
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| 79 | self.domain = domain |
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| 80 | |
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| 81 | def __repr__(self): |
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| 82 | return 'Transmissive_boundary(%s)' %self.domain |
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| 83 | |
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| 84 | def evaluate(self, vol_id, vertex_id): |
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| 85 | """Transmissive boundaries return the edge values |
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| 86 | of the volume they serve. |
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| 87 | """ |
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| 88 | |
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| 89 | q = self.domain.get_conserved_quantities(vol_id, vertex = vertex_id)#(vol_id, edge = edge_id) |
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| 90 | return q |
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| 91 | |
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| 92 | |
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| 93 | class Dirichlet_boundary(Boundary): |
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| 94 | """Dirichlet boundary returns constant values for the |
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| 95 | conserved quantities |
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| 96 | """ |
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| 97 | |
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| 98 | |
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| 99 | def __init__(self, conserved_quantities=None): |
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| 100 | Boundary.__init__(self) |
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| 101 | |
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| 102 | if conserved_quantities is None: |
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| 103 | msg = 'Must specify one value for each conserved quantity' |
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| 104 | raise msg |
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| 105 | |
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| 106 | from Numeric import Float |
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| 107 | from numpy import array |
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| 108 | self.conserved_quantities=array(conserved_quantities).astype(Float) |
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| 109 | |
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| 110 | def __repr__(self): |
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| 111 | return 'Dirichlet boundary (%s)' %self.conserved_quantities |
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| 112 | |
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| 113 | def evaluate(self, vol_id=None, edge_id=None): |
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| 114 | return self.conserved_quantities |
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| 115 | |
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| 116 | |
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| 117 | |
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| 118 | class Time_boundary(Boundary): |
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| 119 | """Time dependent boundary returns values for the |
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| 120 | conserved quantities as a function of time. |
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| 121 | Must specify domain to get access to model time and a function f(t) |
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| 122 | which must return conserved quantities as a function time |
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| 123 | """ |
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| 124 | |
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| 125 | |
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| 126 | def __init__(self, domain = None, f = None): |
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| 127 | Boundary.__init__(self) |
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| 128 | |
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| 129 | try: |
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| 130 | q = f(0.0) |
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| 131 | except Exception, e: |
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| 132 | msg = 'Function for time boundary could not be executed:\n%s' %e |
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| 133 | raise msg |
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| 134 | |
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| 135 | |
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| 136 | from Numeric import Float |
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| 137 | from numpy import array |
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| 138 | try: |
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| 139 | q = array(q).astype(Float) |
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| 140 | except: |
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| 141 | msg = 'Return value from time boundary function could ' |
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| 142 | msg += 'not be converted into a Numeric array of floats.\n' |
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| 143 | msg += 'Specified function should return either list or array.' |
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| 144 | raise msg |
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| 145 | |
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| 146 | msg = 'ERROR: Time boundary function must return a 1d list or array ' |
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| 147 | assert len(q.shape) == 1, msg |
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| 148 | |
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| 149 | d = len(domain.evolved_quantities) |
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| 150 | |
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| 151 | #print 'd = ',d |
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| 152 | msg = 'Return value for f must be a list or an array of length %d' %d |
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| 153 | assert len(q) == d, msg |
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| 154 | |
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| 155 | self.f = f |
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| 156 | self.domain = domain |
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| 157 | |
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| 158 | def __repr__(self): |
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| 159 | return 'Time boundary' |
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| 160 | |
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| 161 | def evaluate(self, vol_id=None, edge_id=None): |
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| 162 | return self.f(self.domain.time) |
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| 163 | |
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| 164 | |
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| 165 | class File_boundary_time(Boundary): |
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| 166 | """Boundary values obtained from file and interpolated. |
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| 167 | conserved quantities as a function of time. |
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| 168 | |
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| 169 | Assumes that file contains a time series. |
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| 170 | |
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| 171 | No spatial info assumed. |
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| 172 | """ |
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| 173 | |
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| 174 | #FIXME: Is this still necessary |
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| 175 | |
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| 176 | def __init__(self, filename, domain): |
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| 177 | import time |
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| 178 | from numpy import array |
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| 179 | from config import time_format |
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| 180 | from util import File_function |
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| 181 | |
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| 182 | Boundary.__init__(self) |
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| 183 | |
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| 184 | self.F = File_function(filename, domain) |
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| 185 | self.domain = domain |
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| 186 | |
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| 187 | #Test |
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| 188 | q = self.F(0) |
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| 189 | |
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| 190 | d = len(domain.conserved_quantities) |
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| 191 | msg = 'Values specified in file must be a list or an array of length %d' %d |
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| 192 | assert len(q) == d, msg |
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| 193 | |
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| 194 | |
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| 195 | def __repr__(self): |
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| 196 | return 'File boundary' |
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| 197 | |
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| 198 | def evaluate(self, vol_id=None, edge_id=None): |
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| 199 | """Return linearly interpolated values based on domain.time |
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| 200 | |
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| 201 | vol_id and edge_id are ignored |
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| 202 | """ |
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| 203 | |
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| 204 | t = self.domain.time |
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| 205 | return self.F(t) |
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| 206 | |
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| 207 | |
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| 208 | |
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| 209 | |
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| 210 | class File_boundary(Boundary): |
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| 211 | """Boundary values obtained from file and interpolated. |
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| 212 | conserved quantities as a function of time. |
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| 213 | |
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| 214 | Assumes that file contains a time series and possibly |
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| 215 | also spatial info. |
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| 216 | See docstring for File_function in util.py for details about |
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| 217 | admissible file formats |
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| 218 | |
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| 219 | The full solution history is not exactly the same as if |
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| 220 | the models were coupled: |
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| 221 | File boundary must read and interpolate from *smoothed* version |
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| 222 | as stored in sww and cannot work with the discontinuos triangles. |
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| 223 | |
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| 224 | """ |
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| 225 | |
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| 226 | def __init__(self, filename, domain, verbose = False): |
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| 227 | import time |
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| 228 | from Numeric import Float |
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| 229 | from numpy import array, zeros |
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| 230 | from config import time_format |
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| 231 | from util import file_function |
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| 232 | |
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| 233 | Boundary.__init__(self) |
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| 234 | |
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| 235 | #Get x,y vertex coordinates for all triangles |
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| 236 | V = domain.vertex_coordinates |
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| 237 | |
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| 238 | #Compute midpoint coordinates for all boundary elements |
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| 239 | #Only a subset may be invoked when boundary is evaluated but |
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| 240 | #we don't know which ones at this stage since this object can be attached to |
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| 241 | #any tagged boundary later on. |
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| 242 | |
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| 243 | if verbose: print 'Find midpoint coordinates of entire boundary' |
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| 244 | self.midpoint_coordinates = zeros( (len(domain.boundary), 2), Float) |
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| 245 | boundary_keys = domain.boundary.keys() |
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| 246 | |
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| 247 | |
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| 248 | xllcorner = domain.geo_reference.get_xllcorner() |
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| 249 | yllcorner = domain.geo_reference.get_yllcorner() |
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| 250 | |
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| 251 | |
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| 252 | #Make ordering unique #FIXME: should this happen in domain.py? |
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| 253 | boundary_keys.sort() |
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| 254 | |
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| 255 | |
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| 256 | #Record ordering #FIXME: should this also happen in domain.py? |
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| 257 | self.boundary_indices = {} |
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| 258 | for i, (vol_id, edge_id) in enumerate(boundary_keys): |
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| 259 | |
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| 260 | x0 = V[vol_id, 0]; y0 = V[vol_id, 1] |
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| 261 | x1 = V[vol_id, 2]; y1 = V[vol_id, 3] |
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| 262 | x2 = V[vol_id, 4]; y2 = V[vol_id, 5] |
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| 263 | |
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| 264 | #Compute midpoints |
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| 265 | if edge_id == 0: m = array([(x1 + x2)/2, (y1 + y2)/2]) |
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| 266 | if edge_id == 1: m = array([(x0 + x2)/2, (y0 + y2)/2]) |
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| 267 | if edge_id == 2: m = array([(x1 + x0)/2, (y1 + y0)/2]) |
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| 268 | |
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| 269 | #Convert to absolute UTM coordinates |
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| 270 | m[0] += xllcorner |
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| 271 | m[1] += yllcorner |
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| 272 | |
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| 273 | #Register point and index |
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| 274 | self.midpoint_coordinates[i,:] = m |
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| 275 | self.boundary_indices[(vol_id, edge_id)] = i |
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| 276 | |
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| 277 | |
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| 278 | if verbose: print 'Initialise file_function' |
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| 279 | self.F = file_function(filename, domain, |
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| 280 | interpolation_points=self.midpoint_coordinates, |
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| 281 | verbose = verbose) |
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| 282 | self.domain = domain |
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| 283 | |
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| 284 | #Test |
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| 285 | q = self.F(0, point_id=0) |
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| 286 | |
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| 287 | d = len(domain.conserved_quantities) |
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| 288 | msg = 'Values specified in file %s must be ' %filename |
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| 289 | msg += ' a list or an array of length %d' %d |
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| 290 | assert len(q) == d, msg |
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| 291 | |
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| 292 | |
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| 293 | def __repr__(self): |
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| 294 | return 'File boundary' |
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| 295 | |
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| 296 | |
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| 297 | def evaluate(self, vol_id=None, edge_id=None): |
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| 298 | """Return linearly interpolated values based on domain.time |
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| 299 | |
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| 300 | vol_id and edge_id are ignored |
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| 301 | """ |
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| 302 | |
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| 303 | t = self.domain.time |
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| 304 | |
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| 305 | if vol_id is not None and edge_id is not None: |
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| 306 | i = self.boundary_indices[ vol_id, edge_id ] |
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| 307 | return self.F(t, point_id = i) |
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| 308 | else: |
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| 309 | #raise 'Boundary call without point_id not implemented' |
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| 310 | #FIXME: What should the semantics be? |
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| 311 | return self.F(t) |
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| 312 | |
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| 313 | |
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| 314 | |
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| 315 | |
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| 316 | |
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| 317 | |
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| 318 | |
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| 319 | |
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| 320 | #THIS FAR (10/8/4) |
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| 321 | class Connective_boundary(Boundary): |
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| 322 | """Connective boundary returns values for the |
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| 323 | conserved quantities from a volume as defined by a connection table |
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| 324 | mapping between tuples of (volume id, face id) for volumes that |
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| 325 | have their boundaries connected. |
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| 326 | |
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| 327 | FIXME: Perhaps include possibility of mapping between |
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| 328 | different domains as well |
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| 329 | |
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| 330 | FIXME: In case of shallow water we may want to have a |
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| 331 | special version that casts this in terms of height rather than stage |
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| 332 | """ |
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| 333 | |
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| 334 | |
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| 335 | def __init__(self, table): |
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| 336 | from domain import Volume |
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| 337 | |
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| 338 | Boundary.__init__(self) |
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| 339 | |
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| 340 | self.connection_table = table |
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| 341 | self.Volume = Volume |
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| 342 | |
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| 343 | def __repr__(self): |
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| 344 | return 'Connective boundary' |
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| 345 | |
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| 346 | #FIXME: IF we ever need to get field_values from connected volume, |
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| 347 | #that method could be overridden here (using same idea as in |
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| 348 | #get_conserved_quantities |
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| 349 | #def get_field_values() |
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| 350 | |
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| 351 | def get_conserved_quantities(self, volume, face=0): |
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| 352 | |
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| 353 | id = volume.id |
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| 354 | if self.connection_table.has_key((id, face)): |
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| 355 | other_id, other_face = self.connection_table[(id, face)] |
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| 356 | |
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| 357 | other_volume = self.Volume.instances[other_id] |
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| 358 | cmd = 'q = other_volume.conserved_quantities_face%d' %face; |
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| 359 | exec(cmd) |
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| 360 | return q |
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| 361 | else: |
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| 362 | msg = 'Volume, face tuple ($d, %d) has not been mapped'\ |
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| 363 | %(id, face) |
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| 364 | raise msg |
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| 365 | |
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| 366 | |
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| 367 | |
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| 368 | |
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| 369 | |
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| 370 | #FIXME: Add a boundary with a general function of x,y, and t |
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| 371 | |
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| 372 | #FIXME: Add periodic boundaries e.g.: |
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| 373 | # Attempt at periodic conditions from advection_spik. Remember this |
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| 374 | # |
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| 375 | #first = 2*(N-1)*N |
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| 376 | #for i in range(1,2*N+1,2): |
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| 377 | # k = first + i-1# |
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| 378 | # |
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| 379 | # print i,k |
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| 380 | # |
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| 381 | # domain[i].faces[2].neighbour = domain[k].faces[1] |
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| 382 | # domain[k].faces[1].neighbour = domain[i].faces[2] |
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| 383 | |
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| 384 | |
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| 385 | |
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| 386 | class General_boundary(Boundary): |
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| 387 | """General boundary which can compute conserved quantities based on |
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| 388 | their previous value, conserved quantities of its neighbour and model time. |
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| 389 | |
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| 390 | Must specify initial conserved quantities, |
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| 391 | neighbour, |
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| 392 | domain to get access to model time |
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| 393 | a function f(q_old, neighbours_q, t) which must return |
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| 394 | new conserved quantities q as a function time |
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| 395 | |
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| 396 | FIXME: COMPLETE UNTESTED - JUST AN IDEA |
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| 397 | """ |
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| 398 | |
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| 399 | def __init__(self, neighbour=None, conserved_quantities=None, domain=None, f=None): |
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| 400 | Boundary.__init__(self, neighbour=neighbour, conserved_quantities=conserved_quantities) |
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| 401 | |
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| 402 | self.f = f |
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| 403 | self.domain = domain |
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| 404 | |
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| 405 | |
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| 406 | def get_conserved_quantities(self, volume=None, face=0): |
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| 407 | return self.f(self.conserved_quantities, |
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| 408 | neighbour.conserved_quantities, |
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| 409 | self.domain.time) |
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| 410 | |
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| 411 | |
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| 412 | |
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| 413 | |
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| 414 | |
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| 415 | class File_boundary_old(Boundary): |
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| 416 | """Boundary values obtained from file and interpolated. |
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| 417 | conserved quantities as a function of time. |
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| 418 | |
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| 419 | Assumes that file contains a time series. |
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| 420 | |
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| 421 | No spatial info assumed. |
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| 422 | """ |
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| 423 | |
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| 424 | |
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| 425 | def __init__(self, domain = None, filename = None): |
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| 426 | import time |
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| 427 | from numpy import array |
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| 428 | from config import time_format |
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| 429 | |
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| 430 | Boundary.__init__(self) |
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| 431 | |
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| 432 | |
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| 433 | try: |
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| 434 | fid = open(filename) |
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| 435 | except Exception, e: |
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| 436 | msg = 'Boundary file %s could not be opened: %s\n' %(filename, e) |
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| 437 | raise msg |
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| 438 | |
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| 439 | |
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| 440 | line = fid.readline() |
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| 441 | fid.close() |
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| 442 | fields = line.split(',') |
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| 443 | msg = 'File %s must have the format date, values' |
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| 444 | assert len(fields) == 2, msg |
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| 445 | |
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| 446 | try: |
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| 447 | starttime = time.mktime(time.strptime(fields[0], time_format)) |
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| 448 | except ValueError: |
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| 449 | msg = 'First field in file %s must be' %filename |
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| 450 | msg += ' date-time with format %s.\n' %time_format |
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| 451 | msg += 'I got %s instead.' %fields[0] |
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| 452 | raise msg |
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| 453 | |
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| 454 | #Split values |
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| 455 | values = [] |
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| 456 | for value in fields[1].split(): |
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| 457 | values.append(float(value)) |
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| 458 | |
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| 459 | q = array(values) |
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| 460 | |
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| 461 | msg = 'ERROR: File boundary function must return a 1d list or array ' |
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| 462 | assert len(q.shape) == 1, msg |
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| 463 | |
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| 464 | d = len(domain.conserved_quantities) |
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| 465 | msg = 'Values specified in file must be a list or an array of length %d' %d |
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| 466 | assert len(q) == d, msg |
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| 467 | |
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| 468 | self.filename = filename |
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| 469 | self.domain = domain |
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| 470 | self.starttime = starttime |
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| 471 | |
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| 472 | if domain.starttime is None: |
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| 473 | domain.starttime = starttime |
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| 474 | else: |
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| 475 | msg = 'Start time as specified in domain (%s) is earlier ' |
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| 476 | 'than the starttime of file %s: %s'\ |
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| 477 | %(domain.starttime, self.filename, self.starttime) |
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| 478 | if self.starttime > domain.starttime: |
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| 479 | raise msg |
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| 480 | |
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| 481 | self.read_time_boundary() #Now read all times in. |
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| 482 | |
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| 483 | |
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| 484 | def read_time_boundary(self): |
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| 485 | from Numeric import Float |
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| 486 | from numpy import zeros, alltrue |
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| 487 | from config import time_format |
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| 488 | import time |
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| 489 | |
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| 490 | fid = open(self.filename) |
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| 491 | lines = fid.readlines() |
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| 492 | fid.close() |
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| 493 | |
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| 494 | N = len(lines) |
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| 495 | d = len(self.domain.conserved_quantities) |
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| 496 | |
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| 497 | T = zeros(N, Float) |
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| 498 | Q = zeros((N, d), Float) |
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| 499 | |
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| 500 | |
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| 501 | for i, line in enumerate(lines): |
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| 502 | fields = line.split(',') |
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| 503 | real_time = time.mktime(time.strptime(fields[0], time_format)) |
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| 504 | |
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| 505 | T[i] = real_time - self.starttime |
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| 506 | |
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| 507 | |
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| 508 | for j, value in enumerate(fields[1].split()): |
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| 509 | Q[i, j] = float(value) |
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| 510 | |
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| 511 | msg = 'Time boundary must list time as a monotonuosly ' |
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| 512 | msg += 'increasing sequence' |
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| 513 | |
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| 514 | assert alltrue( T[1:] - T[:-1] > 0 ), msg |
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| 515 | |
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| 516 | self.T = T #Time |
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| 517 | self.Q = Q #Boundary values |
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| 518 | self.index = 0 #Initial index |
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| 519 | |
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| 520 | |
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| 521 | def __repr__(self): |
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| 522 | return 'File boundary' |
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| 523 | |
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| 524 | def evaluate(self, vol_id=None, edge_id=None): |
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| 525 | """Return linearly interpolated values based on domain.time |
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| 526 | """ |
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| 527 | |
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| 528 | t = self.domain.time |
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| 529 | |
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| 530 | msg = 'Time given in File boundary does not match model time' |
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| 531 | if t < self.T[0]: raise msg |
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| 532 | if t > self.T[-1]: raise msg |
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| 533 | |
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| 534 | oldindex = self.index |
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| 535 | |
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| 536 | #Find slot |
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| 537 | while t > self.T[self.index]: self.index += 1 |
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| 538 | while t < self.T[self.index]: self.index -= 1 |
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| 539 | |
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| 540 | #if oldindex != self.index: |
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| 541 | # print 'Changing from %d to %d' %(oldindex, self.index) |
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| 542 | |
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| 543 | |
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| 544 | #t is now between index and index+1 |
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| 545 | ratio = (t - self.T[self.index])/\ |
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| 546 | (self.T[self.index+1] - self.T[self.index]) |
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| 547 | |
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| 548 | return self.Q[self.index,:] +\ |
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| 549 | ratio*(self.Q[self.index+1,:] - self.Q[self.index,:]) |
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| 550 | |
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| 551 | |
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| 552 | |
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| 553 | |
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