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Changeset 5691

Timestamp:

Aug 27, 2008, 8:52:21 AM (17 years ago)

Author:

duncan

Message:

Adding a header to the boundary files

Location:

anuga_validation/Hinwood_2008

Files:

: 12 edited

S1R1_boundary.csv (modified) (1 diff)
S1R2_boundary.csv (modified) (1 diff)
S2R1_boundary.csv (modified) (1 diff)
S2R2_boundary.csv (modified) (1 diff)
S3R1_boundary.csv (modified) (1 diff)
S3R2_boundary.csv (modified) (1 diff)
S4R1_boundary.csv (modified) (1 diff)
S4R2_boundary.csv (modified) (1 diff)
calc_norm.py (modified) (13 diffs)
prepare_time_boundary.py (modified) (1 diff)
run_dam.py (modified) (4 diffs)
scenarios.py (modified) (8 diffs)

Legend:

: Unmodified
: Added
: Removed

anuga_validation/Hinwood_2008/S1R1_boundary.csv

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 .68,0.017801975125,0.0581,-0.004825
 .72,0.018189622,0.061808333,-0.0047416667
 .76,0.018195775125,0.063975,-0.0039416667
 .8,0.0180173345,0.066058333,-0.0023083333
 .84,0.018121937625,0.069233333,-0.00065
 .88,0.018183468875,0.0732,-7.5e-05
 .92,0.0180173345,0.07565,-0.000925
 .96,0.01807886575,0.076525,-0.002175
 .0,0.0182634595,0.0779,-0.0027833333
 .04,0.01820192825,0.079908333,-0.003325
 .08,0.01810347825,0.08125,-0.0045583333
 .12,0.018220387625,0.081158333,-0.00545
 .16,0.018281918875,0.0816,-0.0045083333
 .2,0.0181157845,0.082966667,-0.0025
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+.8,-0.010717759,-0.05655,-0.000325
+.84,-0.00922255,-0.053608333,-0.000475
+.88,-0.007739647,-0.048208333,-4.17E-05
+.92,-0.006521328,-0.041283333,4.17E-05
+.96,-0.005210712,-0.03545,6.67E-05
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+.04,-0.003081731,-0.027125,0.001008333
+.08,-0.002374122,-0.020816667,0.000766667
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+.24,0.000333253,0.006833333,-0.004675
+.28,0.001933066,0.011591667,-0.0023
+.32,0.003563644,0.016,-0.000516667
+.36,0.005274213,0.019925,-0.0013
+.4,0.007169375,0.023533333,-0.002833333
+.44,0.009046078,0.02735,-0.002975
+.48,0.011002772,0.032275,-0.002341667
+.52,0.013057916,0.038391667,-0.001616667
+.56,0.014953078,0.0442,-0.001625
+.6,0.016522125,0.048933333,-0.002633333
+.64,0.017402022,0.05335,-0.004066667
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+.72,0.018189622,0.061808333,-0.004741667
+.76,0.018195775,0.063975,-0.003941667
+.8,0.018017335,0.066058333,-0.002308333
+.84,0.018121938,0.069233333,-0.00065
+.88,0.018183469,0.0732,-7.50E-05
+.92,0.018017335,0.07565,-0.000925
+.96,0.018078866,0.076525,-0.002175
+,0.01826346,0.0779,-0.002783333
+.04,0.018201928,0.079908333,-0.003325
+.08,0.018103478,0.08125,-0.004558333
+.12,0.018220388,0.081158333,-0.00545
+.16,0.018281919,0.0816,-0.004508333
+.2,0.018115785,0.082966667,-0.0025
 .24,0.018091172,0.084441667,-0.001425
 .28,0.018134243875,0.085991667,-0.0021583333
 .32,0.01805425325,0.086525,-0.003825
 .36,0.01812809075,0.085016667,-0.0052166667
 .4,0.018269612625,0.082908333,-0.00535
 .44,0.018245000125,0.081516667,-0.00365
 .48,0.018238847,0.079316667,-0.0016666667
 .52,0.018195775125,0.075833333,-0.0014916667
 .56,0.018060406375,0.073366667,-0.0022333333
 .6,0.017998875125,0.073391667,-0.0022166667
 .64,0.01807886575,0.073066667,-0.0016083333
+.28,0.018134244,0.085991667,-0.002158333
+.32,0.018054253,0.086525,-0.003825
+.36,0.018128091,0.085016667,-0.005216667
+.4,0.018269613,0.082908333,-0.00535
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+.48,0.018238847,0.079316667,-0.001666667
+.52,0.018195775,0.075833333,-0.001491667
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+.6,0.017998875,0.073391667,-0.002216667
+.64,0.018078866,0.073066667,-0.001608333
 .68,0.018091172,0.070833333,-0.002275
 .72,0.017875812625,0.067616667,-0.0053083333
 .76,0.01775890325,0.064016667,-0.0093666667
 .8,0.01783274075,0.060875,-0.012008333
 .84,0.0176727595,0.059583333,-0.010641667
 .88,0.017303572,0.058233333,-0.0076583333
 .92,0.017038987625,0.054475,-0.0065166667
 .96,0.016448287625,0.049091667,-0.0072083333
 .0,0.0155068595,0.0441,-0.00725
 .04,0.014694647,0.041391667,-0.0054333333
 .08,0.013777831375,0.039908333,-0.0043333333
 .12,0.012584125125,0.038908333,-0.0044166667
 .16,0.011353500125,0.036583333,-0.0038333333
 .2,0.010295162625,0.032158333,-0.0022666667
 .24,0.00956294075,0.027325,-0.0018583333
 .28,0.008830718875,0.02285,-0.00335
 .32,0.007920056375,0.018625,-0.0038916667
 .36,0.007157068875,0.013558333,-0.0014166667
 .4,0.0065479095,0.0088,0.0018333333
 .44,0.005741850125,0.0038666667,0.0035166667
 .48,0.004560450125,-0.001675,0.004525
 .52,0.004406622,-0.006175,0.0052083333
 .56,0.004406622,-0.0087916667,0.003925
 .6,0.004406622,-0.0095,0.00085833333
+.72,0.017875813,0.067616667,-0.005308333
+.76,0.017758903,0.064016667,-0.009366667
+.8,0.017832741,0.060875,-0.012008333
+.84,0.01767276,0.059583333,-0.010641667
+.88,0.017303572,0.058233333,-0.007658333
+.92,0.017038988,0.054475,-0.006516667
+.96,0.016448288,0.049091667,-0.007208333
+,0.01550686,0.0441,-0.00725
+.04,0.014694647,0.041391667,-0.005433333
+.08,0.013777831,0.039908333,-0.004333333
+.12,0.012584125,0.038908333,-0.004416667
+.16,0.0113535,0.036583333,-0.003833333
+.2,0.010295163,0.032158333,-0.002266667
+.24,0.009562941,0.027325,-0.001858333
+.28,0.008830719,0.02285,-0.00335
+.32,0.007920056,0.018625,-0.003891667
+.36,0.007157069,0.013558333,-0.001416667
+.4,0.00654791,0.0088,0.001833333
+.44,0.00574185,0.003866667,0.003516667
+.48,0.00456045,-0.001675,0.004525
+.52,0.004406622,-0.006175,0.005208333
+.56,0.004406622,-0.008791667,0.003925
+.6,0.004406622,-0.0095,0.000858333

anuga_validation/Hinwood_2008/S1R2_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,-0.000260463205,0.00405,0.00735
2	3	0.04,-0.00037737258,0.00405,0.00735

anuga_validation/Hinwood_2008/S2R1_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,-0.001092795,0.002275,-0.00013333333
2	3	0.04,-0.001092795,0.003325,0.000625

anuga_validation/Hinwood_2008/S2R2_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,-0.00043107972,-0.007425,-0.0036833333
2	3	0.04,-0.00043107972,-0.0073416667,-0.00015

anuga_validation/Hinwood_2008/S3R1_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,-0.00027164220625,-0.00315,-0.00068333333
2	3	0.04,-0.00022158595625,-0.00315,-0.00068333333

anuga_validation/Hinwood_2008/S3R2_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,6.3422856e-05,0.0052583333,-0.0018583333
2	3	0.04,8.84516065e-05,0.0052583333,-0.0018583333

anuga_validation/Hinwood_2008/S4R1_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,-0.0003652704675,-0.0032916667,-0.0002
2	3	0.04,-0.00040906968625,-0.0032916667,-0.0002

anuga_validation/Hinwood_2008/S4R2_boundary.csv

r5683	r5691
	1	time (sec),height above still water level (m),x-velocity (m/sec),y-velocity (m/sec)
1	2	0.0,7.487413775e-05,-0.0011583333,-0.0043333333
2	3	0.04,2.48178875e-05,-0.0011583333,-0.0043333333

anuga_validation/Hinwood_2008/calc_norm.py

-                      r5689
+                      r5691
 """
-This is getting really messy.
 All err results are going into the same dir, and it can't really be changed.
 …
 # Standard modules
 import os
-from os import sep, path
 from csv import writer
 from time import localtime, strftime
 # Related major packages
+from Numeric import arange, array, zeros, Float, where, greater, less, \
+     compress, argmin, choose, searchsorted, sqrt, sum
+import project
+from os import sep
+from Numeric import zeros, Float, where, greater, less, compress, sqrt, sum
 from anuga.shallow_water.data_manager import csv2dict
 from anuga.utilities.numerical_tools import ensure_numeric, err, norm
 from anuga.utilities.interp import interp
 …
     assert min > SMALL_MIN
     no_maxs = where(less(vector,max), vector, SMALL_MIN)
-    #print "no_maxs", no_maxs
     band_condition = greater(no_maxs, min)
     return band_condition
 …
               y_location_tag=':0.0'):
     """
     Given a bunch of scenarios that have CSV guage files, calc the
+    Given a list of scenarios that have CSV guage files, calc the
     err, Number_of_samples and rmsd for all gauges in each scenario.
     Write this info to a file for each scenario.
 …
         time_sim = ensure_numeric(time_sim)
         time_exp = ensure_numeric(time_exp)
-        #print "min(time_exp)", min(time_exp)
-        #print "max(time_exp)", max(time_exp)
         condition = get_max_min_condition_array(run_data['wave_times'][0],
                                                 run_data['wave_times'][1],
                                                 time_exp)
+        time_exp_cut = compress(condition, time_exp) #, axis=axis)
+        #print "min(time_exp_cut)", min(time_exp_cut)
+        #print "max(time_exp_cut)", max(time_exp_cut)
+        #assert min(time_sim) < min(time_exp)
+        time_exp_cut = compress(condition, time_exp)
         print "Writing to ", file_err
 …
             err_list.append(norm)
             points.append(len(quantity_sim_interp))
+            rmsd_list.append(norm/sqrt(len(quantity_sim_interp)))
+            #print "norm", norm
+            #for i in range(len(quantity_sim_interp)):
+                #print "quantity_sim_interp", quantity_sim_interp[i]
+                #print "quantity_exp_cut", quantity_exp_cut[i]
+            rmsd_list.append(norm/sqrt(len(quantity_sim_interp)))
         assert len(location_exps) == len(err_list)
 …
     the first colum explains the rows.
     """
-    #slope, _ = csv2dict(file_sim)
     # Read the depth file
 …
     depths = zeros(n_time, Float)  #
     sensors = zeros((n_time,n_sensors), Float)
     quantity_locations = title.split(',') #(',')
+    quantity_locations = title.split(',')
     quantity_locations.pop(0) # remove 'time'
 …
     for i, line in enumerate(lines):
         fields = line.split(',') #(',')
+        fields = line.split(',')
         fields = [float(j) for j in fields]
         times[i] = fields[0]
         sensors[i] = fields[1:] # 1: to remove time
-    #print "times",times
-    #print "locations", locations
-    #print "sensors", sensors
     return times, locations, sensors
 …
 def err_files(scenarios, outputdir_tag, quantity='stage'):
     """
     The err files, for a list of scenarios
+    Create a list of err files, for a list of scenarios.
     """
     file_errs = []
 …
 def compare_different_settings(outputdir_tag, scenarios, quantity='stage'):
+    """
+    Calculate the RMSD for all the tests in a scenario
+    """
     files = err_files(scenarios, outputdir_tag, quantity=quantity)
     err = 0.0
 …
 def err_addition(err_list, number_of_samples_list):
     """
+    err1 is the err value (sqrt(sum_over_x&y((xi - yi)^2))) for a set of values
+    number_of_samples1 is the number of values associated with the err.
+    This function 'sums' a list of errs and sums a list of samples
+    err is the err value (sqrt(sum_over_x&y((xi - yi)^2))) for a set of values.
+    number_of_samples is the number of values associated with the err.
     If this function gets used alot, maybe pull this out and make it an object
 …
     from scenarios import scenarios
+    scenarios = [scenarios[0]] # !!!!!!!!!!!!!!!!!!!!!!
+    #scenarios = scenarios[4:] # !!!!!!!!!!!!!!!!!!!!!!
+    outputdir_tag = "_nolmts_wdth_0.1_z_0.0_ys_0.5_mta_0.01"
+    #scenarios = [scenarios[0]] # !!!!!!!!!!!!!!!!!!!!!!
+    outputdir_tag = "_nolmts_wdth_0.1_z_0.0_ys_0.01_mta_0.01"
     calc_norms = True
     #calc_norms = False

anuga_validation/Hinwood_2008/prepare_time_boundary.py

-                      r5686
+                      r5691
     fid = open(filename[:-4] + '.csv')
+    #Skip first line
+    line = fid.readline()
     # Read remaining lines
     lines = fid.readlines()

anuga_validation/Hinwood_2008/run_dam.py

-                      r5689
+                      r5691
                         end_tag=end_tag,
                         outputdir_name=outputdir_name)
+    basename = outputdir_name
+    metadata_dic = set_z_origin_to_water_depth(metadata_dic)
+    basename = outputdir_name
     if finaltime is None:
 …
 class Elevation_function:
     """
+    """
+    def __init__(self, slope):
+        self.xslope_position = [slope['xleft'][0],slope['xtoe'][0],
+                  slope['xbeach'][0],slope['xright'][0]]
+        self.yslope_height = [slope['xleft'][1],slope['xtoe'][1],
+                  slope['xbeach'][1],slope['xright'][1]]
+    Create a callable instance that returns the bed surface of the
+    flume given the scenario metadata.
+    """
+    def __init__(self, metadata_dic):
+        self.xslope_position = [metadata_dic['xleft'][0],
+                                metadata_dic['xtoe'][0],
+                                metadata_dic['xbeach'][0],
+                                metadata_dic['xright'][0]]
+        self.yslope_height = [metadata_dic['xleft'][1],
+                              metadata_dic['xtoe'][1],
+                              metadata_dic['xbeach'][1],
+                              metadata_dic['xright'][1]]
     def __call__(self, x,y):
         z = interp(self.yslope_height, self.xslope_position, x)
         return z
-def set_z_origin_to_water_depth(metadata_dic):
-    """
-    """
-    offset = metadata_dic['offshore_water_depth']
-    keys = ['xleft', 'xtoe', 'xbeach', 'xright']
-    for x in keys:
-            metadata_dic[x][1] -= offset
-    return metadata_dic
 #-------------------------------------------------------------
 …
     friction=0.0
     isTest=True
     isTest=False
+    #isTest=False
     for run_data in scenarios:
 …
              use_limits=False,
              friction=friction,
              end_tag='')
+             end_tag='_A')

anuga_validation/Hinwood_2008/scenarios.py

-                      r5689
+                      r5691
 scenarios = []
 data = {'xleft':[-3.106,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[8,.4843334],
         'offshore_water_depth':.4,
+offshore_water_depth = .4
+data = {'xleft':[-3.106,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[8,.4843334 - offshore_water_depth],
+        'offshore_water_depth': offshore_water_depth,
         'scenario_id':'S1R1',
         'gauge_names':['B','1','2','3','4','5','7'],
 …
 data = {'xleft':[-3.106,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[8,.4843334],
         'offshore_water_depth':.4,
+data = {'xleft':[-3.106,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[8,.4843334 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S1R2',
         'gauge_names':['B','1','2','3','4','5','7'],
 …
 data = {'xleft':[-4.586,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[8,.4843334],
         'offshore_water_depth':.4,
+data = {'xleft':[-4.586,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[8,.4843334 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S2R1',
         'gauge_names':['B','1','2','3','4','5'],
 …
 scenarios.append(data)
 data = {'xleft':[-4.586,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[8,.4843334],
         'offshore_water_depth':.4,
+data = {'xleft':[-4.586,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[8,.4843334 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S2R2',
         'gauge_names':['B','1','2','3','4','5'],
 …
 scenarios.append(data)
+data = {'xleft':[-3.875,0.0],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0],
+        'xbeach':[1.285,0.090],
+        'xright':[14.,.3903881],
+        'offshore_water_depth':.336,
+offshore_water_depth = .336
+data = {'xleft':[-3.875,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[14.,.3903881 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S3R1',
         'gauge_names':['B','1','2','3','5','7',
 …
 scenarios.append(data)
 data = {'xleft':[-3.875,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[14.,.3903881],
         'offshore_water_depth':.336,
+data = {'xleft':[-3.875,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[14.,.3903881 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S3R2',
         'gauge_names':['B','1','2','3','5','7',
 …
 scenarios.append(data)
 data = {'xleft':[-2.43,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[14.,.3903881],
         'offshore_water_depth':.336,
+data = {'xleft':[-2.43,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[14.,.3903881 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S4R1',
         'gauge_names':['B','1','2','3','5','7',
 …
 data = {'xleft':[-2.43,0.0],  # Av' of ADV and Gauge A
         'xtoe':[0.0,0.0],
         'xbeach':[1.285,0.090],
         'xright':[14.,.3903881],
         'offshore_water_depth':.336,
+data = {'xleft':[-2.43,0.0 - offshore_water_depth],  # Av' of ADV and Gauge A
+        'xtoe':[0.0,0.0 - offshore_water_depth],
+        'xbeach':[1.285,0.090 - offshore_water_depth],
+        'xright':[14.,.3903881 - offshore_water_depth],
+        'offshore_water_depth':offshore_water_depth,
         'scenario_id':'S4R2',
         'gauge_names':['B','1','2','3','5','7',

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