-------------------------------------------------------------------------- An MPI process has executed an operation involving a call to the "fork()" system call to create a child process. Open MPI is currently operating in a condition that could result in memory corruption or other system errors; your MPI job may hang, crash, or produce silent data corruption. The use of fork() (or system() or other calls that create child processes) is strongly discouraged. The process that invoked fork was: Local host: v1447 (PID 3498) MPI_COMM_WORLD rank: 1 If you are *absolutely sure* that your application will successfully and correctly survive a call to fork(), you may disable this warning by setting the mpi_warn_on_fork MCA parameter to 0. -------------------------------------------------------------------------- [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork [v1447:03472] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork [v1447:03472] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:warn-fork python2.6: posixio.c:248: px_pgin: Assertion `*posp == ((off_t)(-1)) || *posp == lseek(nciop->fd, 0, 1)' failed. [v1447:03501] *** Process received signal *** [v1447:03501] Signal: Aborted (6) [v1447:03501] Signal code: (-6) [v1447:03501] [ 0] /lib64/libpthread.so.0 [0x7f2dbf1e6be0] [v1447:03501] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x7f2dbe827285] [v1447:03501] [ 2] /lib64/libc.so.6(abort+0x110) [0x7f2dbe828d30] [v1447:03501] [ 3] /lib64/libc.so.6(__assert_fail+0xf6) [0x7f2dbe820706] [v1447:03501] [ 4] /apps/netcdf/3.6.3/lib/libnetcdf.so.4 [0x7f2daf1e4dd6] [v1447:03501] [ 5] /apps/netcdf/3.6.3/lib/libnetcdf.so.4 [0x7f2daf1e518f] [v1447:03501] [ 6] /apps/netcdf/3.6.3/lib/libnetcdf.so.4 [0x7f2daf1d19bc] [v1447:03501] [ 7] /apps/netcdf/3.6.3/lib/libnetcdf.so.4(nc_get_vara_float+0x218) [0x7f2daf1d2028] [v1447:03501] [ 8] /apps/netcdf/3.6.3/lib/libnetcdf.so.4(nc_get_varm_float+0x4ae) [0x7f2daf1d253e] [v1447:03501] [ 9] /apps/netcdf/3.6.3/lib/libnetcdf.so.4(nc_get_varm+0x18f) [0x7f2daf1d840f] [v1447:03501] [10] /apps/netcdf/3.6.3/lib/libnetcdf.so.4(nc_get_vars+0x10) [0x7f2daf1d8510] [v1447:03501] [11] /apps/netcdf/3.6.3/lib/libnetcdf.so.4(ncvargets+0x16) [0x7f2daf1e62b6] [v1447:03501] [12] /apps/python/2.6/lib/python2.6/site-packages/Scientific/linux2/Scientific_netcdf.so [0x7f2daf473ce5] [v1447:03501] [13] /apps/python/2.6/lib/python2.6/site-packages/Scientific/linux2/Scientific_netcdf.so [0x7f2daf475100] [v1447:03501] [14] python2.6(PyEval_EvalFrameEx+0x14b9) [0x48e459] [v1447:03501] [15] python2.6(PyEval_EvalCodeEx+0x8a5) [0x4945e5] [v1447:03501] [16] python2.6 [0x4ea51c] [v1447:03501] [17] python2.6(PyObject_Call+0x5d) [0x417bbd] [v1447:03501] [18] python2.6(PyEval_EvalFrameEx+0x1975) [0x48e915] [v1447:03501] [19] python2.6(PyEval_EvalFrameEx+0x62fe) [0x49329e] [v1447:03501] [20] python2.6(PyEval_EvalFrameEx+0x62fe) [0x49329e] [v1447:03501] [21] python2.6 [0x4e8129] [v1447:03501] [22] python2.6(PyEval_EvalFrameEx+0xa96) [0x48da36] [v1447:03501] [23] python2.6(PyEval_EvalCodeEx+0x8a5) [0x4945e5] [v1447:03501] [24] python2.6(PyEval_EvalCode+0x32) [0x494622] [v1447:03501] [25] python2.6(PyRun_FileExFlags+0x141) [0x4b5bc1] [v1447:03501] [26] python2.6(PyRun_SimpleFileExFlags+0x1c8) [0x4b5e78] [v1447:03501] [27] python2.6(Py_Main+0x9cf) [0x413d2f] [v1447:03501] [28] /lib64/libc.so.6(__libc_start_main+0xf4) [0x7f2dbe814994] [v1447:03501] [29] python2.6 [0x412f99] [v1447:03501] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 4 with PID 3501 on node v1447 exited on signal 6 (Aborted). --------------------------------------------------------------------------