Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. mpirun: WARNING: unable to determine OpenMPI version of python2.6, runtime version may be incompatible ABOUT to Start Simulation:- Importing Modules Running in parallel on 8 processors Running in parallel on 8 processors Running in parallel on 8 processors Running in parallel on 8 processors Running in parallel on 8 processors Running in parallel on 8 processors Running simulation on 8 processors min estimated number of triangles 1561264 Running in parallel on 8 processors Running in parallel on 8 processors Creating sequential domain... Caching: looking for cached files /short/w85/Shane/.python_cache/_create_domain_from_regions[7336535750887795753]_{Result,Args,Admin}.z Caching: Dependencies are [] Caching: looking for cached files /short/w85/Shane/.python_cache/_create_domain_from_regions[7336535750887795753]x_{Result,Args,Admin}.z Caching: Dependencies are [] Caching: looking for cached files /short/w85/Shane/.python_cache/_create_domain_from_regions[7336535750887795753]xx_{Result,Args,Admin}.z Caching: Dependencies are [] Caching: looking for cached files /short/w85/Shane/.python_cache/_create_domain_from_regions[7336535750887795753]xxx_{Result,Args,Admin}.z Caching: Dependencies are [] Caching: looking for cached files /short/w85/Shane/.python_cache/_create_domain_from_regions[7336535750887795753]xxxx_{Result,Args,Admin}.z Caching: Dependencies are [] +-------------------------------------------------------------------------- | Fri Jun 15 18:21:50 2012. Evaluating function _create_domain_from_regions +-------------------------------------------------------------------------- | Arguments: ([[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [342612.4224, 6276310.4767], [342751.7791, 6276458.8768], [342897.1613, 6276601.3837], [343047.7197, 6276738.4145], [343202.7... | Keyword Args: {'poly_geo_reference': (zone=50 easting=0.000000, northing=0.000000), 'minimum_triangle_angle': 28.0, 'mesh_filename': '/short/w85/Shane/Output/BP5Hydro/final_BP5Hydro_sfm547_np8/Busselton.msh', 'interior_regions': [[[[343759.7913, 6275660.9644], [347278.7567, 6276904.5086], [350400.8463, 6278412.63... | Reason: Arguments have changed +-------------------------------------------------------------------------- Generating mesh to file '/short/w85/Shane/Output/BP5Hydro/final_BP5Hydro_sfm547_np8/Busselton.msh' Constructing Delaunay triangulation by divide-and-conquer method. Recovering segments in Delaunay triangulation. Removing unwanted triangles. Spreading regional attributes and area constraints. Adding Steiner points to enforce quality. Writing vertices. Writing triangles. Writing segments. Writing neighbors. Statistics: Input vertices: 160 Input segments: 160 Input holes: 0 Mesh vertices: 818578 Mesh triangles: 1636724 Mesh edges: 2455301 Mesh exterior boundary edges: 430 Mesh interior boundary edges: 10206 Mesh subsegments (constrained edges): 10636 WARNING: Datum of D_GDA_1194 specified. Default Datum is wgs84. ANUGA does not correct for differences in datums. General_mesh: Building basic mesh structure in ANUGA domain General_mesh: Computing areas, normals and edgelengths (0/1636724) (163673/1636724) (327346/1636724) (491019/1636724) (654692/1636724) (818365/1636724) (982038/1636724) (1145711/1636724) (1309384/1636724) (1473057/1636724) Building inverted triangle structure Initialising mesh Mesh: Computing centroids and radii (0/1636724) (163673/1636724) (327346/1636724) (491019/1636724) (654692/1636724) (818365/1636724) (982038/1636724) (1145711/1636724) (1309384/1636724) (1473057/1636724) Mesh: Building neigbour structure Mesh: Building surrogate neigbour structure Mesh: Building boundary dictionary Mesh: Building tagged elements dictionary Mesh: Done Initialising Domain Domain: Set up communication buffers (parallel) Domain: Initialising quantity values Domain: Done +------------------------------------------------------- | Fri Jun 15 18:42:23 2012. Caching statistics (storing) +------------------------------------------------------- | Function: _create_domain_from_regions | Arguments: ([[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [342612.4224, 6276310.4767], [342751.7791, 6276458.8768], [342897.1613, 6276601.3837], [343047.7197, 6276738.4145], [343202.7... | Keyword Args: {'poly_geo_reference': (zone=50 easting=0.000000, northing=0.000000), 'minimum_triangle_angle': 28.0, 'mesh_filename': '/short/w85/Shane/Output/BP5Hydro/final_BP5Hydro_sfm547_np8/Busselton.msh', 'interior_regions': [[[[343759.7913, 6275660.9644], [347278.7567, 6276904.5086], [350400.8463, 6278412.63... | Reason: Arguments have changed | CPU time: 1232.84 seconds | Loading time: 38.65 seconds (estimated) | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _create_domain_from_regions[7336535750887795753]xxxx_Result(2343864481 bytes) | Args file: _create_domain_from_regions[7336535750887795753]xxxx_Args(4638 bytes) | Admin file: _create_domain_from_regions[7336535750887795753]xxxx_Admin(570 bytes) | | No dependencies +------------------------------------------------------- Calculating elevation on sequential domain FitInterpolate: Building quad tree Building smoothing matrix Geospatial data created from file: /home/547/sfm547/Busselton/anuga/topographies/Busselton_combined_elevation.pts Data will be loaded blockwise on demand Got 1 variables: ['z'] Reading 3125022 points (in ~6250 blocks) from file /home/547/sfm547/Busselton/anuga/topographies/Busselton_combined_elevation.pts. Each block consists of 500 data points Reading block 0 (points 0 to 500) out of 6250 Processing Block 0 Processing Block 200 Processing Block 400 Processing Block 600 Reading block 625 (points 312500 to 313000) out of 6250 Processing Block 800 Processing Block 1000 Processing Block 1200 Reading block 1250 (points 625000 to 625500) out of 6250 Processing Block 1400 Processing Block 1600 Processing Block 1800 Reading block 1875 (points 937500 to 938000) out of 6250 Processing Block 2000 Processing Block 2200 Processing Block 2400 Reading block 2500 (points 1250000 to 1250500) out of 6250 Processing Block 2600 Processing Block 2800 Processing Block 3000 Reading block 3125 (points 1562500 to 1563000) out of 6250 Processing Block 3200 Processing Block 3400 Processing Block 3600 Reading block 3750 (points 1875000 to 1875500) out of 6250 Processing Block 3800 Processing Block 4000 Processing Block 4200 Reading block 4375 (points 2187500 to 2188000) out of 6250 Processing Block 4400 Processing Block 4600 Processing Block 4800 Reading block 5000 (points 2500000 to 2500500) out of 6250 Processing Block 5000 Processing Block 5200 Processing Block 5400 Processing Block 5600 Reading block 5625 (points 2812500 to 2813000) out of 6250 Processing Block 5800 Processing Block 6000 Processing Block 6200 Warning: no data points in fit Applying fitted data to domain Number of triangles = 1636724 The extent is (341959.05119999999, 358586.08970000001, 6267794.1645999998, 6286174.4210000001) ------------------------------------------------ Mesh statistics: Number of triangles = 1636724 Extent [m]: x in [341959.051200, 358586.089700] y in [6267794.164600, 6286174.421000] Areas [m^2]: A in [0.308228, 9999.253174] number of distinct areas: 1636724 Histogram: [0.308228, 1000.202722[: 1614430 [1000.202722, 2000.097217[: 945 [2000.097217, 2999.991711[: 402 [2999.991711, 3999.886206[: 520 [3999.886206, 4999.780701[: 3640 [4999.780701, 5999.675195[: 5433 [5999.675195, 6999.569690[: 4262 [6999.569690, 7999.464185[: 3504 [7999.464185, 8999.358679[: 2310 [8999.358679, 9999.253174]: 1278 Percentiles (10%): 163672 triangles in [0.308228, 1.041748] 163672 triangles in [1.041748, 1.224609] 163672 triangles in [1.224609, 1.449341] 163672 triangles in [1.449341, 1.760498] 163672 triangles in [1.760498, 44.333740] 163672 triangles in [44.333740, 52.972168] 163672 triangles in [52.972168, 61.107910] 163672 triangles in [61.107910, 70.500854] 163672 triangles in [70.500854, 81.551025] 163672 triangles in [81.551025, 9996.067627] 4 triangles in [9996.067627, 9999.253174] Boundary: Number of boundary segments == 430 Boundary tags == ['side', 'back', 'ocean'] ------------------------------------------------ Distributing domain... Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[4156436990851511005]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 20:56:50 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (1190, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [34... | CPU time: 2.12 seconds | Loading time: 0.03 seconds | Time saved: 2.09 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[4156436990851511005]_Result(5620051 bytes) | Args file: _file_function[4156436990851511005]_Args(21893 bytes) | Admin file: _file_function[4156436990851511005]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[9081539890494760680]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:04:36 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (1731, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [34... | CPU time: 2.66 seconds | Loading time: 0.46 seconds | Time saved: 2.2 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[9081539890494760680]_Result(8173571 bytes) | Args file: _file_function[9081539890494760680]_Args(30549 bytes) | Admin file: _file_function[9081539890494760680]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[6198639041883452043]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:12:18 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (915, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [342... | CPU time: 1.99 seconds | Loading time: 0.02 seconds | Time saved: 1.98 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[6198639041883452043]_Result(4322051 bytes) | Args file: _file_function[6198639041883452043]_Args(17493 bytes) | Admin file: _file_function[6198639041883452043]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[-2666237905510430352]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:20:00 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (862, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [342... | CPU time: 1.55 seconds | Loading time: 0.06 seconds | Time saved: 1.49 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[-2666237905510430352]_Result(4071891 bytes) | Args file: _file_function[-2666237905510430352]_Args(16645 bytes) | Admin file: _file_function[-2666237905510430352]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[5230144126761410494]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:27:41 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (1261, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [34... | CPU time: 1.97 seconds | Loading time: 0.05 seconds | Time saved: 1.92 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[5230144126761410494]_Result(5955171 bytes) | Args file: _file_function[5230144126761410494]_Args(23029 bytes) | Admin file: _file_function[5230144126761410494]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[-1178160340156621727]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:35:30 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (1301, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [34... | CPU time: 2.02 seconds | Loading time: 0.06 seconds | Time saved: 1.96 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[-1178160340156621727]_Result(6143971 bytes) | Args file: _file_function[-1178160340156621727]_Args(23669 bytes) | Admin file: _file_function[-1178160340156621727]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[-2040490591447378636]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:43:11 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (818, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [342... | CPU time: 1.35 seconds | Loading time: 0.05 seconds | Time saved: 1.3 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[-2040490591447378636]_Result(3864211 bytes) | Args file: _file_function[-2040490591447378636]_Args(15941 bytes) | Admin file: _file_function[-2040490591447378636]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Find midpoint coordinates of entire boundary Initialise file_function Caching: looking for cached files /short/w85/Shane/.python_cache/_file_function[-4523447770796000684]_{Result,Args,Admin}.z Caching: Dependencies are ['/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts'] +---------------------------------------------------------- | Fri Jun 15 21:44:58 2012. Caching statistics (retrieving) +---------------------------------------------------------- | Function: _file_function | Argument: '/home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts' | Keyword Args: {'time_limit': None, 'interpolation_points': Array: (1346, 2), 'verbose': True, 'domain_starttime': 0, 'boundary_polygon': [[341959.0512, 6275285.8377], [342041.1345, 6275472.1083], [342135.1748, 6275652.6401], [342240.3439, 6275826.9273], [342355.654, 6275994.6822], [342480.0382, 6276155.8293], [34... | CPU time: 2.16 seconds | Loading time: 0.02 seconds | Time saved: 2.15 seconds | | Caching dir: /short/w85/Shane/.python_cache/ | Result file: _file_function[-4523447770796000684]_Result(6356371 bytes) | Args file: _file_function[-4523447770796000684]_Args(24389 bytes) | Admin file: _file_function[-4523447770796000684]_Admin(639 bytes) | | Dependencies: | /home/547/sfm547/Busselton/anuga/boundaries/CutDownWorst.sts: Tue Jun 5 13:44:52 2012 474684 bytes +---------------------------------------------------------- Set boundary - available tags: ['ghost', 'back'] Time = 0.0000, steps=0 (148s) 2012-06-15 21:47:18.377807 Time = 720.0000, delta t in [0.03641969, 0.04248652], steps=18442 (5057s) 2012-06-15 23:11:35.972838 Time = 1440.0000, delta t in [0.03799215, 0.03999243], steps=18574 (5169s) 2012-06-16 00:37:45.026604 Time = 2160.0000, delta t in [0.03999259, 0.04081843], steps=17801 (5002s) 2012-06-16 02:01:07.824534 Time = 2880.0000, delta t in [0.04010209, 0.04127574], steps=17666 (4995s) 2012-06-16 03:24:23.163680 Time = 3600.0000, delta t in [0.04127585, 0.04268449], steps=17106 (4859s) 2012-06-16 04:45:22.357790 Saving restore point at time: 3600 All domain fragments fully written Time = 4320.0000, steps=0 (600s) 2012-06-16 04:55:22.795668 Time = 5040.0000, delta t in [0.04216235, 0.04312184], steps=16894 (4821s) 2012-06-16 06:15:43.935237 Time = 5760.0000, delta t in [0.04122155, 0.04216235], steps=17236 (4942s) 2012-06-16 07:38:06.341095 Time = 6480.0000, delta t in [0.03582477, 0.04122126], steps=18828 (5421s) 2012-06-16 09:08:27.787164 Time = 7200.0000, delta t in [0.03269188, 0.03582468], steps=21238 (6138s) 2012-06-16 10:50:46.587378 Saving restore point at time: 7200 All domain fragments fully written Time = 7920.0000, steps=0 (602s) 2012-06-16 11:00:49.065821 Terminated ============================================================================= Resource usage: CPU time: 135:26:35 JobId: 554881.vu-pbs Elapsed time: 17:00:40 Project: w85 Requested time: 17:00:00 Service Units: 136.09 Max physical memory: 23313MB Max virtual memory: 24628MB Requested memory: 24576MB Number of cpus: 8 Max jobfs disk use: 0.0GB Requested jobfs: 0.4GB =============================================================================