Opened 18 years ago

Last modified 18 years ago

#165 closed defect

problem with C code in fit interpolate — at Version 5

Reported by: nick Owned by: duncan
Priority: high Milestone:
Component: Functionality and features Version:
Severity: normal Keywords:
Cc:

Description (last modified by duncan)

Can you provide any information about this error, it is the third time it has occurred with this code

-----------------------
*** glibc detected *** double free or corruption (!prev): 0x000000000162fc10 ***


One of the processes started by mpirun has exited with a nonzero exit
code.  This typically indicates that the process finished in error.
If your process did not finish in error, be sure to include a "return
0" or "exit(0)" in your C code before exiting the application.

PID 8578 failed on node n10 (192.168.0.241) due to signal 6.
-----------------------------------------------------------------------------

It occurs when running an exmouth model in parallel, (the sequential run works

this is the directory of the parallel run J:\inundation\data\western_australia\exmouth_tsunami_scenario\anuga\outputs\20070525_034301_run_basic_1.4_nbartzis

this is the directory of the last serial run J:\inundation\data\western_australia\exmouth_tsunami_scenario\anuga\outputs\20070525_033245_run_basic_1.4_nbartzis

+-------------------------------------------------------------
| Fri May 25 15:02:22 2007. Evaluating function _file_function
+-------------------------------------------------------------
| Argument:     '/d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww'
| Keyword Args: {'quantities': ['stage', 'xmomentum', 'ymomentum'], 'interpolation_points': Array: (187, 2), 'time_thinning': 12, 'domain_starttime': 0, 'verbose': True}
| Reason:       No cached result
+-------------------------------------------------------------

Reading /d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww
File_function data obtained from: /d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww
  References:
    Lower left corner: [189945.759564, 7488724.335279]
    Start time:   4000.000000
Building interpolation matrix from source mesh (648 vertices, 1086 triangles)
FitInterpolate: Building mesh
FitInterpolate: Building quad tree
Interpolating (187 interpolation points, 1034 timesteps). Timesteps were thinned by a factor of 12
 time step 0 of 1034
 time step 104 of 1034
 time step 208 of 1034
 time step 312 of 1034

here is an example of the same problem with code that runs quicker

\inundation\data\western_australia\exmouth_tsunami_scenario\anuga\outputs\20070530_062210_run_store_0_nbartzis

you should be able to execute "run_exmouth.py" from this directory and it will create another directory with the output results

there is one difference i can see the code fails at a slightly different spot

Find midpoint coordinates of entire boundary
Initialise file_function
Caching: looking for cached files /d/cit/1/cit/unixhome/nbartzis/.python_cache/_file_function[-1913934578119235209]_{Result,Args,Admin}.z
Caching: Dependencies are ['/d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww']
+-------------------------------------------------------------
| Tue Jun  5 08:49:22 2007. Evaluating function _file_function
+-------------------------------------------------------------
| Argument:     '/d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww'
| Keyword Args: {'quantities': ['stage', 'xmomentum', 'ymomentum'], 'interpolation_points': [[  192783.96757945  7566067.52060781]
 [  192597.7735207   7576851.25925281]
 [  192621.04777805  7575503.29192219]
 [  192807.2418368   7564719.55327719]
 [  192644.32203539  7574155.32459156]
 [  192714.14480742  7570111....
| Reason:       No cached result
+-------------------------------------------------------------

Reading /d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww
File_function data obtained from: /d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww
  References:
    Lower left corner: [189945.759564, 7488724.335279]
    Start time:   4000.000000

Processes 1,2,3 fail at this point and processor 0 continues on until it creates a .sww file. All the results are in the directory noted above.

Here's how processor 0 fails;

+-------------------------------------------------------------
| Wed May 30 16:23:08 2007. Evaluating function _file_function
+-------------------------------------------------------------
| Argument:     '/d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww'
| Keyword Args: {'quantities': ['stage', 'xmomentum', 'ymomentum'], 'interpolation_points': Array: (305, 2), 'time_thinning': 48, 'domain_starttime': 0, 'verbose': True}
| Reason:       No cached result
+-------------------------------------------------------------

Reading /d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww
File_function data obtained from: /d/xrd/gem/5/nhi/inundation/data/western_australia/exmouth_tsunami_scenario/anuga/boundaries/urs/dampier/1_10000/exmouth_3854_17042007.sww
  References:
    Lower left corner: [189945.759564, 7488724.335279]
    Start time:   4000.000000

Change History (5)

comment:1 Changed 18 years ago by nick

Description: modified (diff)

comment:2 Changed 18 years ago by nick

Description: modified (diff)
Owner: changed from ole to duncan
Summary: problem with C code in file_functionproblem with C code in fit interpolate

comment:3 Changed 18 years ago by nick

Description: modified (diff)

comment:4 Changed 18 years ago by nick

Description: modified (diff)

comment:5 Changed 18 years ago by duncan

Description: modified (diff)

Here's how

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